View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19851_low_6 (Length: 394)
Name: NF19851_low_6
Description: NF19851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19851_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 363
Target Start/End: Original strand, 6187627 - 6187974
Alignment:
| Q |
16 |
aagccctagagcaatatattttcatgaaagcattgtgccatcttttgctgtgtgtgctattggtgttttttggtgcattaagaagtgtctcaatgtcgtt |
115 |
Q |
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| T |
6187627 |
aagccctagagcaatatattttcatgaaagcattgtgccatcttttgctgtgtgtgctattggtgttttttggtgcattaagaagtgtctcaatgtcgtt |
6187726 |
T |
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| Q |
116 |
catgtttgtgaaaaatgtgattgacatggtttcaagaacacaagtataagaacaataatttttgaaatggtaataataattataatnnnnnnntaaaatg |
215 |
Q |
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| T |
6187727 |
catgtttgtgaaaaatgtgattgacatggtttcaagaacacaagtataagaacaataatttttgaaatggtaataataattataataaaaaaataaaatg |
6187826 |
T |
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| Q |
216 |
tatacgaagaaaattatgaaggaggatgtatagaaagattttgtgaccaaagttgtcccaataggggcaatgcaatgtgtttgttaaattgattcatata |
315 |
Q |
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| T |
6187827 |
tatacgaagaaaattatgaaggaggatgaattgaaagattttgagactatagttgacacaataggaccaatgcaatttgtatgttaaattgatgtaaata |
6187926 |
T |
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| Q |
316 |
aagatatataataacttgatatctttttctattagatatctagttaat |
363 |
Q |
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| T |
6187927 |
ttgaatgataataactttgtatcattttctattatatatatagttaat |
6187974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 4244568 - 4244719
Alignment:
| Q |
16 |
aagccctagagcaatatattttcatgaaagcattgtgccatcttttgctgtgtgtgctattggtgttttttggtgcattaagaagtgtctcaatgtcgtt |
115 |
Q |
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| T |
4244568 |
aagccctagaacaatagattttcatgaaggcgttgtgccatcttatattgtttgggctgttggtgttt---ggtgcattgagaagtgtctcaatgtggtt |
4244664 |
T |
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| Q |
116 |
catgtttgtgaaaaatgtgattgacatggtttcaagaacacaagtataagaacaa |
170 |
Q |
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| T |
4244665 |
caagtttgtgaacaagggcattgacatggtttcgatatcaaaagtataataacaa |
4244719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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