View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19851_low_7 (Length: 375)
Name: NF19851_low_7
Description: NF19851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19851_low_7 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 304036 - 304401
Alignment:
| Q |
1 |
atagatcaaagatgcaaagcaaccaaacaggtgcagagaattcaagagaagcctcccttgtataagaccacctattacgaccaccacacttgtaacaaag |
100 |
Q |
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| T |
304036 |
atagatcaaagatgcaaagcaaccaaacaggtgcagagaattcaagagaagcctcccttgtataagaccacctattacgaccaccacacttgtaacaaag |
304135 |
T |
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| Q |
101 |
acaatatcatcatatttgaacccacttctcctcatgatcacatattgcttagctttaacaacacattcccaactccaacccaacaagattgtcccttttt |
200 |
Q |
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| T |
304136 |
acaatatcatcatatttgaacccacttctcctcatgatcacatattgcttagctttaacaacacattcccaactccaacccaacaagattgtcccttttt |
304235 |
T |
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| Q |
201 |
atcatcgtcgacatcttcatcatcttttaattcctcacat------tcagtggatgaatacctgctctctccgcaaccaatattagataactctatttct |
294 |
Q |
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| T |
304236 |
atcatcgtcgacatcatcatcatcttttaattcctcacattcagtctcagtggatgaatacctgctctctcctcaaccaatattagataactctatttct |
304335 |
T |
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| Q |
295 |
acaaggcatgttcttagtactatatcatcatcaactacactagaatctgatgatcacaaggatatg |
360 |
Q |
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| T |
304336 |
acaaggcatgttcttagtactatatcatcatcaactacactagaatctgatgatcacaaggatatg |
304401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 12465932 - 12465843
Alignment:
| Q |
4 |
gatcaaagatgcaaagcaaccaaacaggtgcagagaattcaagagaagcctcccttgtataagaccacctattacgaccaccacacttgt |
93 |
Q |
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| T |
12465932 |
gatcaaagatgcctaacaaccaagcatgtgcatagaattcaacaaaaacctcccttgtataagacaacctattatggtcaccacacttgt |
12465843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 12465785 - 12465727
Alignment:
| Q |
148 |
cttagctttaacaacacattcccaactccaacccaacaagattgtccctttttatcatc |
206 |
Q |
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| T |
12465785 |
cttagctttaataatacattcccaactccaacaaaacaagaatgtccctttttgtcatc |
12465727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 479088 - 479177
Alignment:
| Q |
4 |
gatcaaagatgcaaagcaaccaaacaggtgcagagaattcaagagaagcctcccttgtataagaccacctattacgaccaccacacttgt |
93 |
Q |
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| T |
479088 |
gatcaaagatgcaaaacaaccaaacaagtgcataaaattcaagaaaatcctcccttgtataagatcacttattatggccaccacacttgt |
479177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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