View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19851_low_9 (Length: 311)

Name: NF19851_low_9
Description: NF19851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19851_low_9
NF19851_low_9
[»] chr3 (12 HSPs)
chr3 (18-209)||(10377916-10378107)
chr3 (26-204)||(10075126-10075304)
chr3 (24-209)||(10136676-10136861)
chr3 (76-209)||(10365502-10365635)
chr3 (42-209)||(10134041-10134208)
chr3 (119-205)||(10102219-10102305)
chr3 (119-205)||(10213142-10213228)
chr3 (98-209)||(10221242-10221353)
chr3 (262-302)||(10378160-10378200)
chr3 (18-73)||(10221351-10221406)
chr3 (26-79)||(10102324-10102377)
chr3 (26-79)||(10213247-10213300)
[»] chr4 (1 HSPs)
chr4 (18-157)||(25793598-25793737)
[»] scaffold0045 (1 HSPs)
scaffold0045 (90-209)||(85754-85873)
[»] chr5 (2 HSPs)
chr5 (98-209)||(26816600-26816711)
chr5 (18-73)||(26816709-26816764)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 10377916 - 10378107
Alignment:
Q  18 ttaagcgcacggtcaacagaaggtgacatatcatgaggtgtgttgctaatgaacaatccatataagcccaaaccaaaaatcaacataacagtaccagcaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10377916 ttaagcgcacggtcaacagaaggtgacatatcatgaggtgtgttgctaatgaacaatccatataagcccaaaccaaaaatcaacataacagtaccagcaa 10378015  T
Q  118 gataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaatttggac 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10378016 gataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaatttggac 10378107  T

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Target: chr3; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 26 - 204
Target Start/End: Complemental strand, 10075304 - 10075126
Alignment:
Q  26 acggtcaacagaaggtgacatatcatgaggtgtgttgctaatgaacaatccatataagcccaaaccaaaaatcaacataacagtaccagcaagataaaca 125  Q
    |||||| |||||| |||| || ||||||||| ||||||| || |||||||||||||| ||||    ||||||||||||||||||||||||||||||||||    
T  10075304 acggtccacagaacgtgaaatgtcatgaggtatgttgctgataaacaatccatataaacccattataaaaatcaacataacagtaccagcaagataaaca 10075205  T
Q  126 tctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaatt 204  Q
    |||||||||  | |||||||||||||||||| |||| | ||||||||||| |||||||||||||| |||||||||||||    
T  10075204 tctgcagcagcaagattcatttattttattgtcataaagaaggctaaatgcaagtaaaaactaaatcttatcagaaatt 10075126  T

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Target: chr3; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 10136861 - 10136676
Alignment:
Q  24 gcacggtcaacagaaggtgacatatcatgaggtgtgttgctaatgaacaatccatataagcccaaaccaaaaatcaacataacagtaccagcaagataaa 123  Q
    |||||||| |||||||||||||| |||||||| | |||| | || |||||||||||||  | ||  ||||||||||||||||| ||||||||||||||||    
T  10136861 gcacggtccacagaaggtgacatgtcatgaggcgcgttggtgataaacaatccatatatacgcattccaaaaatcaacataacggtaccagcaagataaa 10136762  T
Q  124 catctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaatttggac 209  Q
    |||||||||||  | |||||||||||||||||| |||| | |||| | ||||||||||||||||||| | ||||||||||||||||    
T  10136761 catctgcagcagcaagattcatttattttattgtcataaagaaggatgaatgtaagtaaaaactaaatcatatcagaaatttggac 10136676  T

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Target: chr3; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 76 - 209
Target Start/End: Original strand, 10365502 - 10365635
Alignment:
Q  76 catataagcccaaaccaaaaatcaacataacagtaccagcaagataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatg 175  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||| ||| ||| |||||| |||||||||||    
T  10365502 catataagcccataccaaaaatcaacataacagtaccagcaagataaacatctgcagctacaagattcatttaattttttgtcatagagaaggctaaatg 10365601  T
Q  176 taagtaaaaactaaaccttatcagaaatttggac 209  Q
    | ||||||||||||| ||||||||||||||||||    
T  10365602 tcagtaaaaactaaatcttatcagaaatttggac 10365635  T

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Target: chr3; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 42 - 209
Target Start/End: Complemental strand, 10134208 - 10134041
Alignment:
Q  42 gacatatcatgaggtgtgttgctaatgaacaatccatataagcccaaaccaaaaatcaacataacagtaccagcaagataaacatctgcagcaataggat 141  Q
    ||||| ||||||||||||||||| || ||||||||||| |||  ||  || |||||||||||||  |||||||||||||||||||||||||||| | ||     
T  10134208 gacatgtcatgaggtgtgttgctgataaacaatccataaaagaacattccgaaaatcaacataatggtaccagcaagataaacatctgcagcaacaagac 10134109  T
Q  142 tcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaatttggac 209  Q
    ||||||||||||||| |||| | |||||||||||| ||| ||||||||| ||||||||||||||||||    
T  10134108 tcatttattttattgtcataaagaaggctaaatgtcagtcaaaactaaatcttatcagaaatttggac 10134041  T

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Target: chr3; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 119 - 205
Target Start/End: Complemental strand, 10102305 - 10102219
Alignment:
Q  119 ataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaattt 205  Q
    ||||||||||||||||  | |||||||||||||||||| |||| | |||||||||||||||||||||||||| ||||||||||||||    
T  10102305 ataaacatctgcagcagcaagattcatttattttattgtcataaagaaggctaaatgtaagtaaaaactaaagcttatcagaaattt 10102219  T

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Target: chr3; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 119 - 205
Target Start/End: Complemental strand, 10213228 - 10213142
Alignment:
Q  119 ataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaattt 205  Q
    ||||||||||||||||  | |||||||||||||||||| |||| | |||||||||||||||||||||||||| ||||||||||||||    
T  10213228 ataaacatctgcagcagcaagattcatttattttattgtcataaagaaggctaaatgtaagtaaaaactaaagcttatcagaaattt 10213142  T

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Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 209
Target Start/End: Complemental strand, 10221353 - 10221242
Alignment:
Q  98 caacataacagtaccagcaagataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatc 197  Q
    |||||||| |||||  ||||||||||||| |||||||  | | ||||||||||||| || |||| | || ||||||||||||||||||||||| ||||||    
T  10221353 caacataagagtactggcaagataaacatatgcagcagcaagtttcatttattttactgtcataaagaaagctaaatgtaagtaaaaactaaatcttatc 10221254  T
Q  198 agaaatttggac 209  Q
    ||||||||||||    
T  10221253 agaaatttggac 10221242  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 10378160 - 10378200
Alignment:
Q  262 ttattttcatgttctttgtttagataatgatggagaataat 302  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10378160 ttattttcatgttctttgtttagataatgatggagaataat 10378200  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 10221406 - 10221351
Alignment:
Q  18 ttaagcgcacggtcaacagaaggtgacatatcatgaggtgtgttgctaatgaacaa 73  Q
    ||||| |||||||| ||||||| ||||| |||||||||||||||| | ||||||||    
T  10221406 ttaagggcacggtcgacagaagctgacacatcatgaggtgtgttgttgatgaacaa 10221351  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 10102377 - 10102324
Alignment:
Q  26 acggtcaacagaaggtgacatatcatgaggtgtgttgctaatgaacaatccata 79  Q
    |||||| |||||||||||||| |||||||| | |||||| || |||||||||||    
T  10102377 acggtccacagaaggtgacatgtcatgaggcgcgttgctgataaacaatccata 10102324  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 10213300 - 10213247
Alignment:
Q  26 acggtcaacagaaggtgacatatcatgaggtgtgttgctaatgaacaatccata 79  Q
    |||||| |||||||||||||| |||||||| | |||||| || |||||||||||    
T  10213300 acggtccacagaaggtgacatgtcatgaggcgcgttgctgataaacaatccata 10213247  T

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Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 25793737 - 25793598
Alignment:
Q  18 ttaagcgcacggtcaacagaaggtgacatatcatgaggtgtgttgctaatgaacaatccatataagcccaaaccaaaaatcaacataacagtaccagcaa 117  Q
    ||||| |||||||| |||| ||||  || |||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  25793737 ttaagggcacggtcgacagcaggttgcacatcatgaggtgtgttgctgatgaacaatccatataagcccatgccaaaaatcaacataacagtaccagcaa 25793638  T
Q  118 gataaacatctgcagcaataggattcatttattttattga 157  Q
    |||||||||||||||||  | |||||||  ||||||||||    
T  25793637 gataaacatctgcagcagaaagattcatacattttattga 25793598  T

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Target: scaffold0045 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 90 - 209
Target Start/End: Complemental strand, 85873 - 85754
Alignment:
Q  90 ccaaaaatcaacataacagtaccagcaagataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaa 189  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||  | |||||||||||||||||| |||| | |||| | ||||||||||||||||||    
T  85873 ccaaaaatcaacataacggtaccagcaagataaacatttgcagcagcaagattcatttattttattgtcataaagaaggatgaatgtaagtaaaaactaa 85774  T
Q  190 accttatcagaaatttggac 209  Q
    | ||||||||||||||||||    
T  85773 atcttatcagaaatttggac 85754  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 209
Target Start/End: Complemental strand, 26816711 - 26816600
Alignment:
Q  98 caacataacagtaccagcaagataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatc 197  Q
    |||||||| |||||  ||||||||||||| |||||||  | | ||||||||||||| || |||| | || ||||||||||||||||||||||| ||||||    
T  26816711 caacataagagtactggcaagataaacatatgcagcagcaagtttcatttattttactgtcataaagaaagctaaatgtaagtaaaaactaaatcttatc 26816612  T
Q  198 agaaatttggac 209  Q
    ||||||||||||    
T  26816611 agaaatttggac 26816600  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 26816764 - 26816709
Alignment:
Q  18 ttaagcgcacggtcaacagaaggtgacatatcatgaggtgtgttgctaatgaacaa 73  Q
    ||||| |||||||| ||||||| ||||| |||||||||||||||| | ||||||||    
T  26816764 ttaagggcacggtcgacagaagctgacacatcatgaggtgtgttgttgatgaacaa 26816709  T

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