View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19852_high_4 (Length: 337)
Name: NF19852_high_4
Description: NF19852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19852_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 10 - 333
Target Start/End: Complemental strand, 180201 - 179877
Alignment:
| Q |
10 |
tcataggaagcaaaggagatgatgtcagcctctgtcatggaggagagaagaagattgatgattagctgatcaagagtgaaccactttgtgtattcaggat |
109 |
Q |
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| T |
180201 |
tcataggaagcaaaggagatgatgtcagcctttgtcatggaggagagaagaagattgatgattagctgatcaagagtgaaccactttgtgtattcaggat |
180102 |
T |
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| Q |
110 |
tgggagcatagacaccattgttgataatagtttctgtttgaattggtgtggttccgtctatgtgacccat-acttcgataccagcaagcagggtagtgac |
208 |
Q |
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| T |
180101 |
tgggagcatagacaccgttgttgataatagtttctgtttgaattggtgtggttccgtctatgtgacccataacttcgataccagcaagcagggtagtgac |
180002 |
T |
|
| Q |
209 |
ttgacgtttccaagcacgaaaatttttgcgagacaatttgaacttgattgaggcatttagaataagatatgatttggtgttggaagggttggtggccatg |
308 |
Q |
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| T |
180001 |
ttgacgtttccaagcacgaaaatttttgctagacaatttgaacgtgattgaggcatttagaataagatatgatttggtgttggaagggttggtggccatg |
179902 |
T |
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| Q |
309 |
ttgttgaaaataggatcgtatggtg |
333 |
Q |
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| T |
179901 |
ttgttgaaaataggatcttatggtg |
179877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 10 - 327
Target Start/End: Complemental strand, 1700585 - 1700270
Alignment:
| Q |
10 |
tcataggaagcaaaggagatgatgtcagcctctgtcatggaggagagaagaagattgatgattagctgatcaagagtgaaccactttgtgtattcaggat |
109 |
Q |
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| T |
1700585 |
tcataggaagcaaaggagatgctgtcagcctctgtcatggaggagagaagaagattgatgattagctgatcaagagtgaaccactttgtgtaatcaggat |
1700486 |
T |
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| Q |
110 |
tgggagcatagacaccattgttgataatagtttctgtttgaattggtgtggttccgtctatgtgacccat-acttcgataccagcaagcagggtagtgac |
208 |
Q |
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| T |
1700485 |
tgggagcagagacaccgttgttgataatagtttctgtttgaattggtgtggttccgtctatgtgacccataacttcgataccagcaagcagggtagtgac |
1700386 |
T |
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| Q |
209 |
ttgacgtttccaagcacgaaaatttttgcgagacaatttgaacttgattgaggcatttagaataagatatgatttggtgttggaagggttggtggccatg |
308 |
Q |
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| T |
1700385 |
ttgacgtttccaagcacggaaatttttgcgagacagtttgaacgtgattgaggcatttagaataagagatgatttggtgttggaagggttggtggcca-- |
1700288 |
T |
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| Q |
309 |
ttgttgaaaataggatcgt |
327 |
Q |
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| T |
1700287 |
-tgttgaaaataggatcgt |
1700270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 103
Target Start/End: Complemental strand, 5399354 - 5399261
Alignment:
| Q |
10 |
tcataggaagcaaaggagatgatgtcagcctctgtcatggaggagagaagaagattgatgattagctgatcaagagtgaaccactttgtgtatt |
103 |
Q |
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|||||||| ||||| || || |||| || |||||||| ||||||| ||||||||||||||| || ||||||| ||||||||| |||||||||| |
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| T |
5399354 |
tcataggaggcaaatgatatactgtctgcttctgtcatagaggagataagaagattgatgatgagttgatcaatagtgaaccaatttgtgtatt |
5399261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 103
Target Start/End: Complemental strand, 3540351 - 3540258
Alignment:
| Q |
10 |
tcataggaagcaaaggagatgatgtcagcctctgtcatggaggagagaagaagattgatgattagctgatcaagagtgaaccactttgtgtatt |
103 |
Q |
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|||||||| ||||| || || |||| || |||||||| |||||| ||||||||||||||| || || |||| ||||||||| |||||||||| |
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| T |
3540351 |
tcataggaggcaaatgatatactgtctgcttctgtcataaaggagataagaagattgatgatgagttggtcaatagtgaaccaatttgtgtatt |
3540258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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