View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19853_high_2 (Length: 250)
Name: NF19853_high_2
Description: NF19853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19853_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 42292343 - 42292111
Alignment:
| Q |
1 |
cttcaatgttgaaactgtccactctgtttgtccaagatctcctgcacatttt-aattatagacatatgagatgaaaaactagttttcactaactatagtg |
99 |
Q |
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| T |
42292343 |
cttcaatgttgaaactgtccactctgtttgtccaagatctcctgcacatttttaattatagacatatgagatgaaaaactagttttcacta----tagtg |
42292248 |
T |
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| Q |
100 |
tggctttaatgag-atgtagagcacataccaactactccaaacatgattggaaattgagctggtgcagtcttaaaattgtatgttttttctgagtcaccc |
198 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42292247 |
tggctttaatgaggatgtagaggacataccaactactccaaacatgattggaaaatgagctggtgcagtcttaaaattgtatgttttttctgagtcaccc |
42292148 |
T |
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| Q |
199 |
aaacggtagtagtagactgtattaggtttgaggggac |
235 |
Q |
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||||||||||||||||||||||||||| ||||||||| |
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| T |
42292147 |
aaacggtagtagtagactgtattaggtctgaggggac |
42292111 |
T |
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