View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19853_low_1 (Length: 260)
Name: NF19853_low_1
Description: NF19853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19853_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 12921844 - 12922075
Alignment:
| Q |
11 |
cagagacattgcgcagagtttgcctctttgggaagtgacataacatacactgaataccnnnnnnnnnnnngcattaaatgaataagatcttgctgcacgt |
110 |
Q |
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| T |
12921844 |
cagagacattgcgcagagtttgcctctttgggaagtgacataacatacactgaataccaaaaataaaaaagcattaaatgaataagatcttgctgcacgt |
12921943 |
T |
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| Q |
111 |
aaatctttgtccagtcaaattgttctgaatgaattacctcactgtttagttgtgcagttatactgcatataatgatgatacttcacatatcctctcctct |
210 |
Q |
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| T |
12921944 |
aaatctttgtccagtcaaattgttctgaatgaattacctcactgtttagttgtgcagttatactgcatataatgatgatacttcacatatcctctcctct |
12922043 |
T |
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| Q |
211 |
taagatgcacataagcacataaaggaagctaa |
242 |
Q |
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| T |
12922044 |
caagatgcacataagcacataaaggaagctaa |
12922075 |
T |
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