View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19853_low_2 (Length: 260)
Name: NF19853_low_2
Description: NF19853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19853_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 46556789 - 46556994
Alignment:
| Q |
15 |
agaagcttgttgttcgtttcacgtttttcatctaccccttttctatgttagcactcatggcaaatctgcagagatcaaggaaatctcgaagaagatgaag |
114 |
Q |
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| T |
46556789 |
agaagcttcttgttcgtttcacgtttttcatctatcccttttctatgttagcactcatggcaaatctacagagatcaagggaatctcgaagaagatgaag |
46556888 |
T |
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| Q |
115 |
ccacattcagagtctaaataaaagaaaatatcnnnnnnnntagaaagtgttgttgtttctcaacctg---tagaataggttaaccggtaaaagaataaaa |
211 |
Q |
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| T |
46556889 |
ccacattcagagtctaaataaaagaaaatat-taaaaaaatagaaagtgttgttgtttctcaacctgtgatagaatacgttaaccggtaaaagaataaaa |
46556987 |
T |
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| Q |
212 |
tttggag |
218 |
Q |
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| T |
46556988 |
tttggag |
46556994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 18191832 - 18191779
Alignment:
| Q |
158 |
aaagtgttgttgtttctcaacctgtagaataggttaaccggtaaaagaataaaa |
211 |
Q |
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| T |
18191832 |
aaagcgttgttatttctcaacctgtagaacagattaacaagtaaaagaataaaa |
18191779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 18900753 - 18900700
Alignment:
| Q |
158 |
aaagtgttgttgtttctcaacctgtagaataggttaaccggtaaaagaataaaa |
211 |
Q |
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| T |
18900753 |
aaagcgttgttatttctcaacctgtagaacaggttaacaggtaaaagaataaaa |
18900700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 45970125 - 45970077
Alignment:
| Q |
163 |
gttgttgtttctcaacctgtagaataggttaaccggtaaaagaataaaa |
211 |
Q |
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| T |
45970125 |
gttgttatttctcaacctgtagaacaggttaacaggtaaaagaataaaa |
45970077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 11128814 - 11128867
Alignment:
| Q |
158 |
aaagtgttgttgtttctcaacctgtagaataggttaaccggtaaaagaataaaa |
211 |
Q |
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| T |
11128814 |
aaagcgttgttatttctcaacctgtagaacaggttaataggtaaaagaataaaa |
11128867 |
T |
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