View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19854_low_1 (Length: 511)
Name: NF19854_low_1
Description: NF19854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19854_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 14 - 493
Target Start/End: Original strand, 11742171 - 11742662
Alignment:
| Q |
14 |
atgaaatgaatatgtatttactagtgatagataattctcaccttctgaattgnnnnnnnaagaattgagttagatctaatccaaattttaagacgatatc |
113 |
Q |
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| T |
11742171 |
atgaaatgaatatgtgtttactaatgatagataattctcaccttatgaattgttttttcaagaattgagttagatctaatccaaattttaagacgatatc |
11742270 |
T |
|
| Q |
114 |
aacgc-----cgagatccattatgcctcattttatcgggtctctcgctattaggccactcag----------cactgtagttgtccagtcctagaagtga |
198 |
Q |
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| T |
11742271 |
aacgcatgtccaagatccattatgcctcattttatcgggtctctcgctattagaccactcagtattagttaacagtgtagttgtccaatcctagaagtga |
11742370 |
T |
|
| Q |
199 |
gaaggtgtgttaccgatttcaccggatgccacctcttatcaagtctttcgttatcaggccattcagattacactccaactgtctatatgtctataagtgg |
298 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| | |||||||| ||||||||||||| |
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| T |
11742371 |
gaaggtgtgttaccggtttcaccggatgccacctcttatcaggtctttcgttatcaggccattcagataacactctacctgtctatgtgtctataagtgg |
11742470 |
T |
|
| Q |
299 |
tgaatatttcctcattttaaaagcaatatctcatccaatagctcttagagtcggttactatatatatcttagttaaaaattaaatcattaaaagtggtcg |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||| |
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| T |
11742471 |
tgaatatttcctcattttaaaagcaatatctcatccaatagctcttagagtcggttaccatatatatcttaattaaaaattaaatcagtaaaagtggtcg |
11742570 |
T |
|
| Q |
399 |
gatatcgattgcaaaaaattcttacagcaagatttatattgcttttatctagtttcattgactaaagaaattagctatactgttttggatctaaa |
493 |
Q |
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||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11742571 |
gat---gattgcaaaaaattctgacagcaagatttatattgcttttatctagtttcattgactaaagaaattagctatactgttttggatctaaa |
11742662 |
T |
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