View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19854_low_2 (Length: 456)
Name: NF19854_low_2
Description: NF19854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19854_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 23554353 - 23553932
Alignment:
| Q |
1 |
acacacacactaatcaaagatagaaatcgaaacgtgaacgaatggttgagagacccaagtatatttacctaactatctttaaattatagaatttatcatg |
100 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
23554353 |
acacacgcactaatcaaagatagaaatagaaacgtgaacgaatggttgagagacccaagtatatttagccaactatctttaaattatagaatttatcatg |
23554254 |
T |
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| Q |
101 |
ttaatcatcataaatagtattatatttgccgttaggaaaaaacacagccttacattagtataaggcattatcactgattcacacaatcttatatatcatc |
200 |
Q |
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| T |
23554253 |
ttaatcatcataaata---ttatatttgccattaggaaaaaacacagccttacattagtttaaggcattatcactgattcacacaatcttatatatcatc |
23554157 |
T |
|
| Q |
201 |
ctttatttctaggttccagtatgttcgttatgattattagccacattagata--atgctcctttagaagaactacaaagaaatatcacaaacagcttgta |
298 |
Q |
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| T |
23554156 |
ctttatttctaggttccagtatgttcgttatgattattagccacattagataatatgctcctttagaagaactacaaagaaatatcacaaacaacttgta |
23554057 |
T |
|
| Q |
299 |
ttatagttttgataagctcaacattataatcactttcactggcatactttcaccaacaacttggtgattgtcacaagaagttgtattagtaaaattaata |
398 |
Q |
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| T |
23554056 |
ttatagttttgataagctcaacattataatc--------------actttcaccaacaacttggtgattatcacaagaagttgtattagtaaaattaaca |
23553971 |
T |
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| Q |
399 |
ccacaattgcacattcaattaacgaaggattcaataaaa |
437 |
Q |
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| T |
23553970 |
ccacaattgcacattcaattaacgaaggattcaataaaa |
23553932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 23306914 - 23306820
Alignment:
| Q |
147 |
gccttacattagtataaggcattatcactgattcacacaatct--tatatatcatcctttatttctaggttccagtatgttcgttatgattatta |
239 |
Q |
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| T |
23306914 |
gccttacattagtttaaggcattgacactgattcacacactcttatatatattagcctttatttctaggtttcattatgttcgttatgatcatta |
23306820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 23306668 - 23306610
Alignment:
| Q |
372 |
caagaagttgtattagtaaaattaataccacaattgcacattcaattaacgaaggattc |
430 |
Q |
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| T |
23306668 |
caagaagttggattagtaaaattaataccataattgcacatcaaattcatgaaggattc |
23306610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 23306760 - 23306720
Alignment:
| Q |
335 |
cactggcatactttcaccaacaacttggtgattgtcacaag |
375 |
Q |
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| T |
23306760 |
cactagcatactttcaccaacaccttgatgattgtcacaag |
23306720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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