View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19854_low_9 (Length: 231)
Name: NF19854_low_9
Description: NF19854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19854_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 35875641 - 35875841
Alignment:
| Q |
14 |
tgagatgaatgcaaagagaaaatcacaaacgcaacatcgtttgagtctcaacaagtttgctgatatgaatcctgaggagtttagtaaaacctacttacca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35875641 |
tgagatgaatgcaaagagaaaatcacaaacgcaacatcgtttgagtctcaacaagtttgctgatatgagtcctgaggagtttagtaaaacctacttacca |
35875740 |
T |
|
| Q |
114 |
aagatagagatgcagataccgtccaa---ggacaacgcaaagcttaaagatgatgatgattgtgaaaaccttcccacttctgtagattggagggaaaaag |
210 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35875741 |
aagatagagatgcaggtaccgtccaatcgggacaacgcaaagcttaaagatgatgatgattgtgaaaaccttcccacttctgtagattggagggaaaaag |
35875840 |
T |
|
| Q |
211 |
g |
211 |
Q |
| |
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| |
|
|
| T |
35875841 |
g |
35875841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 24449842 - 24450042
Alignment:
| Q |
14 |
tgagatgaatgcaaagagaaaatcacaaacgcaacatcgtttgagtctcaacaagtttgctgatatgaatcctgaggagtttagtaaaacctacttacca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24449842 |
tgagatgaatgcaaagagaaaatcacaaacgcaacatcgtttgagtctcaacaagtttgctgatatgagtcctgaggagtttagtaaaacctacttacca |
24449941 |
T |
|
| Q |
114 |
aagatagagatgcagataccgtccaa---ggacaacgcaaagcttaaagatgatgatgattgtgaaaaccttcccacttctgtagattggagggaaaaag |
210 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24449942 |
aagatagagatgcaggtaccgtccaatcgggacaacgcaaagcttaaagatgatgatgattgtgaaaaccttcccacttctgtagattggagggaaaaag |
24450041 |
T |
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| Q |
211 |
g |
211 |
Q |
| |
|
| |
|
|
| T |
24450042 |
g |
24450042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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