View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19855_high_12 (Length: 360)
Name: NF19855_high_12
Description: NF19855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19855_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 663531 - 663200
Alignment:
| Q |
16 |
atgtatggttcatataagcaccaaatattttaacaccattaggtattcttgtaacaccagcacgcatagcaatgttgtgaacaatatttgcaccactgct |
115 |
Q |
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| T |
663531 |
atgtatggttcatataagcaccaaatattttaacaccattaggtattcttgtaacaccagcacgcatagcaatgttgtgaacaatatttgcaccactgct |
663432 |
T |
|
| Q |
116 |
atcaccaccaataaaaactttgttgaaatcaccatgattaatgatccaagggtcactattttctggaacattttcaatggtagtgttatgagaagcaacc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
663431 |
atcaccaccaataaaaactttgttgaaatcaccatgattaatgatccaagggtcactattttctggaacattttcaatggtagtgttatgagaagcaacc |
663332 |
T |
|
| Q |
216 |
caattgagaccatcccaacaatcattatattgcattggaagaaaatgttctggagcttttctatattcaatagaaaaaattagaacatttccttgagaag |
315 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
663331 |
caattgagaccatcccaacaatcattatattgcgttggaagaaaatgttctggagcttttctatattcaatagaaaaaattagaacatttccttgagaag |
663232 |
T |
|
| Q |
316 |
caataatgttacaatatttgtgatgatgtgat |
347 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
663231 |
caataatgttacaatatttgtgatgatgtgat |
663200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 69 - 172
Target Start/End: Complemental strand, 673249 - 673146
Alignment:
| Q |
69 |
acaccagcacgcatagcaatgttgtgaacaatatttgcaccactgctatcaccaccaataaaaactttgttgaaatcaccatgattaatgatccaagggt |
168 |
Q |
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||||||||||||||||||| ||||||| || ||| ||||||| |||||||||||||| |||||| | ||||||| ||||||||| || |||||||||| |
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| T |
673249 |
acaccagcacgcatagcaacgttgtgacaaagattaccaccactactatcaccaccaatgaaaactctattgaaattaccatgattgattatccaagggt |
673150 |
T |
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| Q |
169 |
cact |
172 |
Q |
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|||| |
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| T |
673149 |
cact |
673146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 673124 - 673083
Alignment:
| Q |
203 |
atgagaagcaacccaattgagaccatcccaacaatcattata |
244 |
Q |
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| T |
673124 |
atgagaagcaacccaatagagaccatcccaacaatcattata |
673083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 47301573 - 47301488
Alignment:
| Q |
72 |
ccagcacgcatagcaatgttgtgaacaatatttgcaccactgctatcaccaccaataaaaactttgttgaaatcaccatgattaat |
157 |
Q |
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| T |
47301573 |
ccagcacgcatagcgatgttatgaactatgttaccaccagcactatcaccaccaatgaaaactctgttgaaatcaccgtggttaat |
47301488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 47304471 - 47304386
Alignment:
| Q |
72 |
ccagcacgcatagcaatgttgtgaacaatatttgcaccactgctatcaccaccaataaaaactttgttgaaatcaccatgattaat |
157 |
Q |
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|||||||||||||| ||||| ||||| || || ||||| ||| |||||||||| |||||| |||||||||||||||| ||||| |
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| T |
47304471 |
ccagcacgcatagcgatgttatgaactatgttaccaccagcactagcaccaccaatgaaaactctgttgaaatcaccatggttaat |
47304386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 17841710 - 17841625
Alignment:
| Q |
72 |
ccagcacgcatagcaatgttgtgaacaatatttgcaccactgctatcaccaccaataaaaactttgttgaaatcaccatgattaat |
157 |
Q |
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|||||||||||||| ||||| ||||| || || ||||| ||| ||||||||| |||||| |||||||||||||||| ||||| |
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| T |
17841710 |
ccagcacgcatagcgatgttatgaactatgttaccaccagaactaggaccaccaatgaaaactctgttgaaatcaccatggttaat |
17841625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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