View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19855_high_19 (Length: 239)
Name: NF19855_high_19
Description: NF19855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19855_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 85 - 225
Target Start/End: Original strand, 25329393 - 25329533
Alignment:
| Q |
85 |
gcagtatggtatgtctatatttctcaaaatggtgcatctttacatgaactaaagtgtgatatttatactatcaaagttaccactattttatgtatgaaat |
184 |
Q |
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| T |
25329393 |
gcagtatgatatatctatatttctcaaaatggtgcatctttacatgaactaaagtatgatatttatactaccaaagttaccactattttatgtatgaaat |
25329492 |
T |
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| Q |
185 |
aatttacattgctattctaagttggaattcagatagatatt |
225 |
Q |
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| T |
25329493 |
aatttacataactattctaagttggaattcagatagatatt |
25329533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 181
Target Start/End: Complemental strand, 6856530 - 6856442
Alignment:
| Q |
94 |
tatgtctatatttctcaaaatggtgcatctttacatgaactaaag-tgtgatatttatactatcaaagttaccactattttatgtatga |
181 |
Q |
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| T |
6856530 |
tatgtttagatttcttaaaatggtgcatttttacatgaacaaaaaatgtgatatttatactattaaatttaccattattatatgtatga |
6856442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 17290305 - 17290257
Alignment:
| Q |
123 |
tttacatgaactaaagtgtgatatttatactatcaaagttaccactatt |
171 |
Q |
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| T |
17290305 |
tttacatgaactaaagtgtggtatttataccactaaatttaccactatt |
17290257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 26654532 - 26654468
Alignment:
| Q |
106 |
tctcaaaatggtgcatctttacatgaactaaagtgtgatatttatactatcaaagttaccactatt |
171 |
Q |
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| T |
26654532 |
tctcaaaatggtgtgt-tttacatgaaccaaagtgtggtatttatactattaaatttaccactatt |
26654468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 14006378 - 14006334
Alignment:
| Q |
103 |
atttctcaaaatggtgcatctttacatgaactaaagtgtgatattt |
148 |
Q |
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| T |
14006378 |
atttctcaaaatggtgcat-tttacataaactaaagtgtgatattt |
14006334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 17458698 - 17458784
Alignment:
| Q |
103 |
atttctcaaaatggtgcatctttacatgaactaaagtgtgatatttatactatcaaagttaccactattttatgtatgaaataattt |
189 |
Q |
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| T |
17458698 |
atttcttaaaatggtgtgtttttacatgaatcaaagtgtgatatttagactactaaatttaccactattacatgtgtgaaattattt |
17458784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 35918990 - 35919056
Alignment:
| Q |
107 |
ctcaaaatggtgcatctttacatga---actaaagtgtgatatttatactatcaaagttaccactat |
170 |
Q |
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| T |
35918990 |
ctcaaaatggtgcatctttacatgaaccaccaaagtatgatatttatattattaaatttaccactat |
35919056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 11907383 - 11907347
Alignment:
| Q |
117 |
tgcatctttacatgaactaaagtgtgatatttatact |
153 |
Q |
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| T |
11907383 |
tgcatttttacataaactaaagtgtgatatttatact |
11907347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 189
Target Start/End: Original strand, 35552512 - 35552600
Alignment:
| Q |
102 |
tatttctcaaaa-tggtgcatctttacatgaactaaagtgtgatatttatactatcaaagttaccactattttatgtatgaaataattt |
189 |
Q |
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| T |
35552512 |
tatttctcaaaaatgatgtatttttacatgaatcaaagtgtggtatttatactactaaatttaccactattacatatatgaaattattt |
35552600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 208
Target Start/End: Original strand, 35287303 - 35287402
Alignment:
| Q |
110 |
aaaatggtgcatctttacatgaactaaa-gtgtgatatttatactatcaaagttaccactattttatgtatgaaataatttacattgctattctaagttg |
208 |
Q |
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| T |
35287303 |
aaaatggtgtatttttacatgaaccaaaagtgtggtatttatactactaaatttaacactattacatgtatgaaattatttattttactgttctaagttg |
35287402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 1388320 - 1388259
Alignment:
| Q |
110 |
aaaatggtgcatctttacatgaactaaagtgtgatatttatactatcaaagttaccactatt |
171 |
Q |
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| T |
1388320 |
aaaatggtgtgtttttacatgaattaaagtgtggtatttatactactaaatttaccactatt |
1388259 |
T |
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