View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19855_high_20 (Length: 205)
Name: NF19855_high_20
Description: NF19855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19855_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 35340746 - 35340553
Alignment:
| Q |
1 |
catacatgtgttgcaccgtgcagctgatggaattagtttgttctataacctactatcaccttagatcaatttaaaaat----atcatatcctctatttct |
96 |
Q |
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| T |
35340746 |
catacatgtgttgcaccgtgcagctgatggaattagtttgttctataaactactatcaccttagatcaatttaaaaatatcgatcatatcctctatttct |
35340647 |
T |
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| Q |
97 |
tgcagtctttattatatatgtagggaatctggacaaaattgtctttgatacaattgtaaaaatggtaattagtgtcatttttaattaatatcaat |
191 |
Q |
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| T |
35340646 |
tgcagtctttattatatatgtagggaatctggacaatattgtctttgatacaattgt-aaaatggtaattagtgtcatttttaattaatatcaat |
35340553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 13580008 - 13579879
Alignment:
| Q |
1 |
catacatgtgttgcaccgtgcagctgatggaattagtttgttctataacctactatcaccttagatcaatttaaaaatatcatatcctctatttcttgca |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
13580008 |
catacatgtgttgcaccgtgcagctgatggaattactttgttctataaactactatcaacttagatcaatttacaaatatcatatcctctatttcttgca |
13579909 |
T |
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| Q |
101 |
gtctttattatatatgtagggaatctggac |
130 |
Q |
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| T |
13579908 |
gtctttattatatatgtagggaatcaggac |
13579879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 13579852 - 13579794
Alignment:
| Q |
132 |
aaattgtctttgatacaattgtaaaaatggtaattagtgtcatttttaattaatatcaat |
191 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13579852 |
aaattttctttgatacaattgtaaaa-tggtaattagtgtcatttttaattaatatcaat |
13579794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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