View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19855_high_6 (Length: 413)

Name: NF19855_high_6
Description: NF19855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19855_high_6
NF19855_high_6
[»] chr3 (6 HSPs)
chr3 (1-171)||(21086427-21086597)
chr3 (200-383)||(21086213-21086394)
chr3 (3-84)||(18193038-18193120)
chr3 (4-79)||(19277710-19277785)
chr3 (153-206)||(27082068-27082121)
chr3 (254-302)||(55350408-55350456)
[»] scaffold0753 (1 HSPs)
scaffold0753 (136-377)||(3404-3635)
[»] chr4 (4 HSPs)
chr4 (136-377)||(9243367-9243598)
chr4 (136-284)||(27432821-27432967)
chr4 (155-214)||(13961185-13961244)
chr4 (254-302)||(11960148-11960196)
[»] chr5 (4 HSPs)
chr5 (150-276)||(11992725-11992849)
chr5 (137-214)||(7958547-7958625)
chr5 (3-88)||(7958660-7958746)
chr5 (25-88)||(11992898-11992962)
[»] chr1 (1 HSPs)
chr1 (31-118)||(2015283-2015369)
[»] chr7 (6 HSPs)
chr7 (19-118)||(8650518-8650617)
chr7 (3-79)||(11671352-11671428)
chr7 (144-206)||(11669739-11669801)
chr7 (3-79)||(8271020-8271095)
chr7 (138-206)||(49003868-49003936)
chr7 (3-79)||(49003983-49004059)
[»] chr2 (3 HSPs)
chr2 (137-273)||(10423036-10423171)
chr2 (155-295)||(20480553-20480690)
chr2 (3-88)||(10422915-10423001)
[»] chr6 (1 HSPs)
chr6 (155-228)||(20471468-20471540)
[»] scaffold0008 (2 HSPs)
scaffold0008 (136-195)||(53494-53553)
scaffold0008 (245-295)||(53591-53641)


Alignment Details
Target: chr3 (Bit Score: 151; Significance: 9e-80; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 21086597 - 21086427
Alignment:
1 tcgtggatggacagtgtcgttgaccaatacaaaggaaataattttcgatatatatgttttattacattagagtttaaaattaaatcacacttgacagagg 100  Q
    |||||||||||| |||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
21086597 tcgtggatggacggtgttgttgaccaatgaaaaggaaataattttcgatatatatgttttattacattagagtttaaaattaaatcacacttgacagagg 21086498  T
101 aacgatgaatgatctcttatatttggaaaactcctcaaagtggaaaatgaaaagaaaaagtggtcgaaaat 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
21086497 aacgatgaatgatctcttatatttggaaaactcctcaaagtggaaaatgagaagaaaaagtggtcgaaaat 21086427  T

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Target: chr3; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 200 - 383
Target Start/End: Complemental strand, 21086394 - 21086213
Alignment:
200 ttaattgttaaaaaaccaaatagaattaatagagtttaagctgttttaaattacaagggaggtgcttgtcaatttgataacaaaataagggagattggtg 299  Q
    ||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||  |    
21086394 ttaatagttaaaaaaacaaatagaattaatagagtttaagctgtgttaaattacaagggaggtgcttgtcaatttgataacaaaatacgggagattg--g 21086297  T
300 tttttagttaaatagtaaaaaataaagaaggtgtttgtgttatttaagaagaccttgaacgaggttggtctaatttgctcatga 383  Q
    | |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
21086296 tctttagttaaatagtaaaaaatagaggaggtgtttgtgttatttaagaagaccttgaacgaggttggtctaatttgctcatga 21086213  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 18193038 - 18193120
Alignment:
3 gtggatggacagtgtcgttgaccaatacaaaggaaataattttcgatatatatgttttattacattagagttt-aaaattaaa 84  Q
    ||||||||||| ||| ||||| ||||  ||||||||||||||||||||||   |||||||||||||||||||| |||||||||    
18193038 gtggatggacattgtggttgatcaatgaaaaggaaataattttcgatatactcgttttattacattagagtttgaaaattaaa 18193120  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 19277785 - 19277710
Alignment:
4 tggatggacagtgtcgttgaccaatacaaaggaaataattttcgatatatatgttttattacattagagtttaaaa 79  Q
    |||||||||| ||| ||||| ||||  |||||||||||| |||||||||| | |||||||| ||||||||||||||    
19277785 tggatggacattgtggttgatcaatgaaaaggaaataatcttcgatatatctattttattatattagagtttaaaa 19277710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 27082121 - 27082068
Alignment:
153 agaaaaagtggtcgaaaattaagggagtttatactcgtatgaagaagttaattg 206  Q
    ||||||| || | |||||||||| ||||| ||||||||||||||||||||||||    
27082121 agaaaaaatgattgaaaattaagcgagttcatactcgtatgaagaagttaattg 27082068  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 55350408 - 55350456
Alignment:
254 aagggaggtgcttgtcaatttgataacaaaataagggagattggtgttt 302  Q
    |||||||||| ||||| ||||||||||||| |||||||| || ||||||    
55350408 aagggaggtgtttgtccatttgataacaaagtaagggaggttagtgttt 55350456  T

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Target: scaffold0753 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 136 - 377
Target Start/End: Complemental strand, 3635 - 3404
Alignment:
136 caaagtggaaaatgaaaagaaaaagtggtcgaaaattaagggagtttatactcgtatgaagaagttaattgttaaaaaaccaaatagaattaatagagtt 235  Q
    |||||||||||||| ||||||||||||||  ||||||||| || || ||||||||||||| |||||||||| ||||| | ||||||||| ||| ||||||    
3635 caaagtggaaaatggaaagaaaaagtggttaaaaattaagagatttcatactcgtatgaaaaagttaattgctaaaaca-caaatagaagtaacagagtt 3537  T
236 taagctgttttaaattacaagggaggtgcttgtcaatttgataacaaaataagggagattggtgtttttagttaaatagtaaaaaataaagaaggtgttt 335  Q
    ||| || | |||||||| | |||||||| || ||||||||||||| |||||| ||||| | |||  ||||||       ||||||||||||||  |||||    
3536 taaactctgttaaattatacgggaggtgattctcaatttgataacgaaataaaggagaatagtg--tttagt-------taaaaaataaagaatatgttt 3446  T
336 gtgttatttaagaagaccttgaacgaggttggtctaatttgc 377  Q
    |||||| ||||||||||||| |  |||||| |||||||||||    
3445 gtgttacttaagaagaccttaagtgaggttagtctaatttgc 3404  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 136 - 377
Target Start/End: Original strand, 9243367 - 9243598
Alignment:
136 caaagtggaaaatgaaaagaaaaagtggtcgaaaattaagggagtttatactcgtatgaagaagttaattgttaaaaaaccaaatagaattaatagagtt 235  Q
    ||||||| |||||  |||||||||||||| |||||||||| ||||| ||||||||||||| |||||||||| |||| ||  |||||||||||| ||||||    
9243367 caaagtgtaaaatcgaaagaaaaagtggttgaaaattaagagagttcatactcgtatgaaaaagttaattgctaaataa-taaatagaattaacagagtt 9243465  T
236 taagctgttttaaattacaagggaggtgcttgtcaatttgataacaaaataagggagattggtgtttttagttaaatagtaaaaaataaagaaggtgttt 335  Q
    ||| | || |||||||| | |||| ||| || ||||||||||||  |||||| ||||| | |||  ||||||       ||||||||||||    |||||    
9243466 taaaccgtgttaaattatatgggaagtgattctcaatttgataatgaaataaaggagaatagtg--tttagt-------taaaaaataaagggtatgttt 9243556  T
336 gtgttatttaagaagaccttgaacgaggttggtctaatttgc 377  Q
    |||||| ||||||||||||| |  |||||| |||||||||||    
9243557 gtgttaattaagaagaccttaagtgaggttagtctaatttgc 9243598  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 136 - 284
Target Start/End: Original strand, 27432821 - 27432967
Alignment:
136 caaagtggaaaatgaaaagaaaaagtggtcgaaaattaagggagtttatactcgtatgaagaagttaattgttaaaaaaccaaatagaattaatagagtt 235  Q
    ||||||| |||||  |||||||||  |||| |||| |||| ||||| |||||||||||||||||||||||| | |||||  |||| ||||||||| ||||    
27432821 caaagtgaaaaatagaaagaaaaaaaggtcaaaaactaagtgagttcatactcgtatgaagaagttaattgctcaaaaa--aaatggaattaataaagtt 27432918  T
236 taagctgttttaaattacaagggaggtgcttgtcaatttgataacaaaa 284  Q
    ||| |||| ||| |||| | |||||||||||||||||||||||| ||||    
27432919 taaactgtgttatattatatgggaggtgcttgtcaatttgataaaaaaa 27432967  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 13961185 - 13961244
Alignment:
155 aaaaagtggtcgaaaattaagggagtttatactcgtatgaagaagttaattgttaaaaaa 214  Q
    ||||| |||| ||||||||| |||||| |||||||||| ||||||||||| || ||||||    
13961185 aaaaaatggttgaaaattaaaggagttcatactcgtataaagaagttaatggtaaaaaaa 13961244  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 11960196 - 11960148
Alignment:
254 aagggaggtgcttgtcaatttgataacaaaataagggagattggtgttt 302  Q
    ||||| |||| || ||||||||||||||||||||||||| || ||||||    
11960196 aagggtggtgtttttcaatttgataacaaaataagggaggtttgtgttt 11960148  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 150 - 276
Target Start/End: Complemental strand, 11992849 - 11992725
Alignment:
150 aaaagaaaaagtggtcgaaaattaagggagtttatactcgtatgaagaagttaattgttaaaaaaccaaatagaattaatagagtttaagctgttttaaa 249  Q
    |||||||||| || |||||||||||| ||||| |||||||||||||||||||||||| | || ||  |||| ||||||| | ||||||| | || |||||    
11992849 aaaagaaaaaatgatcgaaaattaagtgagttcatactcgtatgaagaagttaattgctcaagaa--aaatggaattaacaaagtttaaaccgtattaaa 11992752  T
250 ttacaagggaggtgcttgtcaatttga 276  Q
    ||| |||| | ||||||||||||||||    
11992751 ttataaggcaagtgcttgtcaatttga 11992725  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 214
Target Start/End: Complemental strand, 7958625 - 7958547
Alignment:
137 aaagtggaaaatgaaaagaaaaagtggtcgaaaa-ttaagggagtttatactcgtatgaagaagttaattgttaaaaaa 214  Q
    |||||| |||||| ||||||||| |||||||||| ||||| ||||||||||||||||| |||||||||||| |||||||    
7958625 aaagtgaaaaatggaaagaaaaaatggtcgaaaaattaagtgagtttatactcgtatggagaagttaattgctaaaaaa 7958547  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 7958746 - 7958660
Alignment:
3 gtggatggacagtgtcgttgaccaatacaaaggaaataattttcgatatatatgttttattacattagagttt-aaaattaaatcac 88  Q
    ||||||||||| ||  ||||| ||||  |||| ||||||| || |||||||  ||||||||| |||||||||| |||||||||||||    
7958746 gtggatggacattgcagttgatcaatgaaaagaaaataatctttgatatatccgttttattatattagagtttaaaaattaaatcac 7958660  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 11992962 - 11992898
Alignment:
25 caatacaaaggaaataattttcgatatatatgttttattacattagagttt-aaaattaaatcac 88  Q
    ||||| |||||||||||| |||||| |||  ||||||| |||||||||||| ||||||||| |||    
11992962 caataaaaaggaaataatcttcgatgtatccgttttatcacattagagtttaaaaattaaaccac 11992898  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 2015283 - 2015369
Alignment:
31 aaaggaaataattttcgatatatatgttttattacattagagtttaaaattaaatcacacttgacagaggaacgatgaatgatctctt 118  Q
    |||||||||||| |||||||||| | |||||||| ||||||||||||||||||| |||| |||||| |||||| |||| |||||||||    
2015283 aaaggaaataatcttcgatatatctattttattaaattagagtttaaaattaaaccaca-ttgacaaaggaacaatgagtgatctctt 2015369  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 8650617 - 8650518
Alignment:
19 gttgaccaatacaaaggaaataattttcgatatatatgttttattacattagagttt-aaaattaaatcacacttgacagaggaacgatgaatgatctct 117  Q
    |||||| |||| ||||||||||||  ||||||||| |||||||||| |||||||||| ||||||||| |||| ||| || |||||| |||| ||||||||    
8650617 gttgactaataaaaaggaaataatcatcgatatatctgttttattaaattagagtttaaaaattaaaccaca-ttgccaaaggaacaatgagtgatctct 8650519  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 11671428 - 11671352
Alignment:
3 gtggatggacagtgtcgttgaccaatacaaaggaaataattttcgatatatatgttttattacattagagtttaaaa 79  Q
    |||||||| || ||| ||||| ||||  ||| |||||||| || |||||||||||||||||||||||||||||||||    
11671428 gtggatgggcattgtggttgatcaatgaaaaagaaataatctttgatatatatgttttattacattagagtttaaaa 11671352  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 11669801 - 11669739
Alignment:
144 aaaatgaaaagaaaaagtggtcgaaaattaagggagtttatactcgtatgaagaagttaattg 206  Q
    |||||| ||||||||| |||||||| || ||| ||||| ||||||||||||||||||||||||    
11669801 aaaatggaaagaaaaaatggtcgaatatgaagtgagttcatactcgtatgaagaagttaattg 11669739  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 8271020 - 8271095
Alignment:
3 gtggatggacagtgtcgttgaccaatacaaaggaaataattttcgatatatatgttttattacattagagtttaaaa 79  Q
    ||||||||||| ||| ||||| ||||  ||||||||||| ||| |||||||  ||||||||||||||| ||||||||    
8271020 gtggatggacattgtggttgatcaatgaaaaggaaataacttt-gatatatccgttttattacattagtgtttaaaa 8271095  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 49003936 - 49003868
Alignment:
138 aagtggaaaatgaaaagaaaaagtggtcgaaaattaagggagtttatactcgtatgaagaagttaattg 206  Q
    ||||| |||||| ||||||||| || ||  |||||||| ||||| |||||| |||||||||||||||||    
49003936 aagtgaaaaatggaaagaaaaaatgatccgaaattaagtgagttcatactcttatgaagaagttaattg 49003868  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 49004059 - 49003983
Alignment:
3 gtggatggacagtgtcgttgaccaatacaaaggaaataattttcgatatatatgttttattacattagagtttaaaa 79  Q
    ||||| ||||| ||| ||||| ||||| ||| || ||||| || ||||||| ||||||||||||||| |||||||||    
49004059 gtggaaggacattgtggttgatcaataaaaacgatataatctttgatatatctgttttattacattaaagtttaaaa 49003983  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 273
Target Start/End: Original strand, 10423036 - 10423171
Alignment:
137 aaagtggaaaatgaaaagaaaaagtggtcgaaaa-ttaagggagtttatactcgtatgaagaagtt-aattgttaaaaaaccaaatagaattaatagagt 234  Q
    |||||| |||||| ||||||||| |||||||||| ||||| ||||||||||||||||| ||||||| ||||| ||||||   ||||||||||||   |||    
10423036 aaagtgaaaaatggaaagaaaaaatggtcgaaaaattaagtgagtttatactcgtatggagaagttaaattgctaaaaa---aaatagaattaacgaagt 10423132  T
235 ttaagctgttttaaattacaagggaggtgcttgtcaatt 273  Q
    ||||   || ||| |||| | |||| |||||||||||||    
10423133 ttaaaacgtgttatattataggggaagtgcttgtcaatt 10423171  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 155 - 295
Target Start/End: Complemental strand, 20480690 - 20480553
Alignment:
155 aaaaagtggtcgaaaattaagggagtttatactcgtatgaagaagttaattgttaaaaaaccaaatagaattaatagagtttaagctgttttaaattaca 254  Q
    ||||| |||| | |||||||||||||| |||||||||| ||||||||||||| |||||||   ||| ||||||| |  | |||| | || |||||||| |    
20480690 aaaaaatggttgcaaattaagggagttcatactcgtataaagaagttaattgctaaaaaa---aatggaattaacaaggcttaaaccgtgttaaattata 20480594  T
255 agggaggtgcttgtcaatttgataacaaaataagggagatt 295  Q
    | ||| | |||||||| ||| ||| | ||||||||||||||    
20480593 acggaagagcttgtcattttcatagctaaataagggagatt 20480553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 10422915 - 10423001
Alignment:
3 gtggatggacagtgtcgttgaccaatacaaaggaaataattttcgatatatatgttttattacattagagttt-aaaattaaatcac 88  Q
    ||||||||||| ||  ||||| ||||  |||| ||||||| || |||||||  ||||||||| |||||||||| |||||||||||||    
10422915 gtggatggacattgcagttgatcaatgaaaagaaaataatatttgatatatccgttttattatattagagtttaaaaattaaatcac 10423001  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 20471468 - 20471540
Alignment:
155 aaaaagtggtcgaaaattaagggagtttatactcgtatgaagaagttaattgttaaaaaaccaaatagaattaa 228  Q
    ||||| |||| || ||||||||||||| ||| |||||| |||||||||||||||||||||  ||||||||||||    
20471468 aaaaaatggttgagaattaagggagttcatagtcgtataaagaagttaattgttaaaaaa-taaatagaattaa 20471540  T

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Target: scaffold0008 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 53494 - 53553
Alignment:
136 caaagtggaaaatgaaaagaaaaagtggtcgaaaattaagggagtttatactcgtatgaa 195  Q
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53494 caaagtgaaaaatgataagaaaaaatggtcgaaaattaaagaagttcatacttgtatgaa 53553  T

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Target: scaffold0008; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 53591 - 53641
Alignment:
245 ttaaattacaagggaggtgcttgtcaatttgataacaaaataagggagatt 295  Q
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53591 ttaaattataaaggagttgcttgtcactttgataactaaataagggagatt 53641  T

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