View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19855_low_10 (Length: 373)
Name: NF19855_low_10
Description: NF19855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19855_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 10067581 - 10067221
Alignment:
| Q |
1 |
ttggttgaagtatacgataataacacaatacgcgccaagacttatgcgaatctatacgttgttcaatgaagtaacaagcacttctggtatattaactgag |
100 |
Q |
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| T |
10067581 |
ttggttgaagtatacgataataacacaatacgcgccaagacttatgcgaatctatacgttgttcaatgaagtaacaagcacttctggtatattaactgag |
10067482 |
T |
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| Q |
101 |
acagcatgggctggagctgcttataatctctttctttatatgctagcaagtcatgtaagcttgtaattttgttacttctgtcacaagcattagtttatgt |
200 |
Q |
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| T |
10067481 |
acagcatgggctggagctgcttataatctctttctttatatgctagcaagtcatgtaagcttgtaattttgttacttctgtcacaagcattagtttatgt |
10067382 |
T |
|
| Q |
201 |
atgttccttgttactataagctaagttttatgataaaaaatccaaattatttgtgatattaggttgttggagcattttggtatttgttttcaatagaatc |
300 |
Q |
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| T |
10067381 |
atgttccttgttactataagctaagttttatgataaaaaatccaaattatttgtgatattaggttgttggagcattttggtatttgttttcaatagaatc |
10067282 |
T |
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| Q |
301 |
agagttgcggtgttggcgcagacggttgaagaatactccattctttgatgattcctatctg |
361 |
Q |
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| T |
10067281 |
agagttgcggtgttggcgcagacggttgaagaatactccgttctttgatgattcctatctg |
10067221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 158
Target Start/End: Original strand, 48464639 - 48464735
Alignment:
| Q |
62 |
ttcaatgaagtaacaagcacttctggtatattaactgagacagcatgggctggagctgcttataatctctttctttatatgctagcaagtcatgtaa |
158 |
Q |
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| T |
48464639 |
ttcaaagaagtaactagaacttcaggcatattgacagagacagcatgggctggagctgtttacaatcttttcctctacatgctagcaagtcatgtaa |
48464735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 41390346 - 41390408
Alignment:
| Q |
95 |
actgagacagcatgggctggagctgcttataatctctttctttatatgctagcaagtcatgta |
157 |
Q |
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| T |
41390346 |
actgaaacagcatgggctggagctgcatttaatctctttctttacatgcttgcaagtcatgta |
41390408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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