View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19855_low_11 (Length: 366)
Name: NF19855_low_11
Description: NF19855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19855_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 10068003 - 10067671
Alignment:
| Q |
18 |
agatacttaagttctcacttcatcattgacattctatcaattcttccacttcctcaggtatcagaactcaaagtgannnnnnnatttaagcatattctaa |
117 |
Q |
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| T |
10068003 |
agatacttaagttctcacttcatcattgacattctatcaattcttccacttcctcaggtatcagaactcaaagtgatttttttatttaagcatattctaa |
10067904 |
T |
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| Q |
118 |
ggagttccttaaggaccaatcaaaagttaaaagtacttattcagaagtttagtttcttaagttatcaatgtaatagaatgtgaatttttcaataaataca |
217 |
Q |
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| T |
10067903 |
ggagttccttaaggaccaatcaaaagttaaaagtacttattcagaagtttagtttcttaagttatcaatgtaatagaatgtgaatttttcaataaataca |
10067804 |
T |
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| Q |
218 |
aatcatttctagattacctaactagtgctcttaagcatagctatcgttatcttacgatacatgcgaagtcaactgtaataataattttgatttcagttta |
317 |
Q |
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| T |
10067803 |
aatcatttctagattacctaactagtgctcttaagcatagctatcgttatcttacgatacatgcgaagtcaactgtaataataattttgatttcagttta |
10067704 |
T |
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| Q |
318 |
atttataatgagaaatacataatactatgatgt |
350 |
Q |
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| T |
10067703 |
atttataatgagaaatacataatactatgatgt |
10067671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 48464347 - 48464409
Alignment:
| Q |
17 |
aagatacttaagttctcacttcatcattgacattctatcaattcttccacttcctcaggtatc |
79 |
Q |
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| T |
48464347 |
aagatacttgagttctcatttcatcgttgacattctatcaattattccactaccacaggtatc |
48464409 |
T |
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