View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19855_low_14 (Length: 350)
Name: NF19855_low_14
Description: NF19855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19855_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 62 - 333
Target Start/End: Original strand, 29194834 - 29195105
Alignment:
| Q |
62 |
aattatcaaatggtttctgtttacaaaatctttttgttaatacagcgatctcataaatttttcaattcaatccagtacaaaattctttgcattgaacttt |
161 |
Q |
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| T |
29194834 |
aattatcaaatggtttctgtttacaaaatctttttgttaatacagcgatctcataaatttttcaattcaatccggtacaaaattctttgcattgaacttt |
29194933 |
T |
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| Q |
162 |
tttccacttgttaccaaatgatatggagcatagtccaagttattctcatctcaactaaagtctaaaaaataatggtaagtttacctaggttcctaaaaat |
261 |
Q |
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| T |
29194934 |
tttccacttgttaccaaatgatatggagcatagtccaagttattctcatctcaactaaagtctaaaaaataatggtaagtttacctaggttcctaaaaat |
29195033 |
T |
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| Q |
262 |
ttgctttagattagttgtgtgaaatggcaggtgaggatgttaagataaatgaaaaagcttaaaccatccaat |
333 |
Q |
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| T |
29195034 |
ttgctttagattagttgtgtgaaatggcaagtgaggatgttaagataaatgaaaaagcttaaaccatccaat |
29195105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 36 - 196
Target Start/End: Complemental strand, 4043386 - 4043228
Alignment:
| Q |
36 |
ttagtcagtgttaagctaatgaagtcaattatcaaatggtttctgtttacaaaatctttttgttaatacagcgatctcataaatttttcaattcaatcca |
135 |
Q |
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| T |
4043386 |
ttagtcagtgtttagctaatgaagtcaaatatcaaatagtttctgtttacaaaatctatttgttaatacaacgatctcaaaaa--aaaaaattcaatccg |
4043289 |
T |
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| Q |
136 |
gtacaaaattctttgcattgaacttttttccacttgttaccaaatgatatggagcatagtc |
196 |
Q |
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| T |
4043288 |
gtacaaagttctttgtattgaactttttcccacttgttaccagataatatggagcctagtc |
4043228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 26663440 - 26663542
Alignment:
| Q |
12 |
atgaagacttacctgatattagttttagtcagtgttaagctaatgaagtcaattatcaaatggtttctgtttacaaaatctttttgttaatacagcgatc |
111 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| || || |
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| T |
26663440 |
atgaagacttacctgatattggttttagtcggtgttaagctaatgaagtcagatatcaaatggtttttgtttacaaaatctttttgttaatacaacgttc |
26663539 |
T |
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| Q |
112 |
tca |
114 |
Q |
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||| |
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| T |
26663540 |
tca |
26663542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 26663594 - 26663641
Alignment:
| Q |
190 |
catagtccaagttattctcatctcaactaaagtctaaaaaataatggt |
237 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26663594 |
catagttcaagttattctcatctcaactcaagtctaaaaaataatggt |
26663641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 26666186 - 26666270
Alignment:
| Q |
240 |
gtttacctaggttcctaaaaatttgctttagattagttgtgtgaaatggcaggtgaggatgttaagataaatgaaaaagcttaaac |
325 |
Q |
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| T |
26666186 |
gtttacctaggttcatacaaaattgccttagattagttgtgtgaaaaggcagcgaaggatg-tgagataaatggaaaaacttaaac |
26666270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 9e-58; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 36 - 196
Target Start/End: Complemental strand, 33631081 - 33630923
Alignment:
| Q |
36 |
ttagtcagtgttaagctaatgaagtcaattatcaaatggtttctgtttacaaaatctttttgttaatacagcgatctcataaatttttcaattcaatcca |
135 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| ||| || |||||||||||| |
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| T |
33631081 |
ttagtcagtgtttagctaatgaagtcaaatatcaaatggtttctgtttacaaaatctttttgttaatacaacaatctcaaaaaatt--caattcaatcca |
33630984 |
T |
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| Q |
136 |
gtacaaaattctttgcattgaacttttttccacttgttaccaaatgatatggagcatagtc |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| |
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| T |
33630983 |
gtacaaaattctttgcattgaacttttttccacttgttacgagatgatatggagcctagtc |
33630923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 33630872 - 33630825
Alignment:
| Q |
190 |
catagtccaagttattctcatctcaactaaagtctaaaaaataatggt |
237 |
Q |
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| T |
33630872 |
catagtccaagttattctcatctcaactaaagtctaaaaaataatggt |
33630825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 240 - 325
Target Start/End: Complemental strand, 33630780 - 33630696
Alignment:
| Q |
240 |
gtttacctaggttcctaaaaatttgctttagattagttgtgtgaaatggcaggtgaggatgttaagataaatgaaaaagcttaaac |
325 |
Q |
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||||||||||||||||| |||||||| ||||||||||||| |||| ||||| ||||||||| ||||||||| |||||||||||| |
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| T |
33630780 |
gtttacctaggttcctacaaatttgccttagattagttgtttgaagaggcagtggaggatgtt-agataaatggaaaagcttaaac |
33630696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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