View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19855_low_16 (Length: 269)
Name: NF19855_low_16
Description: NF19855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19855_low_16 |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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| [»] scaffold1630 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 26948709 - 26948944
Alignment:
| Q |
11 |
catcatcatgcctactcaatatttgctcataagcttctagtgagcctattaattctgtcgctgacaaagtagacaaatatttggtttgcacaatcgtggt |
110 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||| || |||||||||| ||||||| || |
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| T |
26948709 |
catcatcatgcctactcaatctttgctcataagcttctagtgagcctattaattctgtcactaacaaagtagacagatctttggtttgctcaatcgtagt |
26948808 |
T |
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| Q |
111 |
aacaattgcatcatatctacgaggaatataaattcgaatttcctcaacaattcttttgtcgagaatactatccccgtaagttttcatttgactcactagt |
210 |
Q |
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||||||||||||||| ||||||||||| ||||| |||||| ||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||| |
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| T |
26948809 |
aacaattgcatcatacttacgaggaatagaaattagaattttctcaacaattcttttgtcgagaatattatccctgtatgttttcatttgactcactagt |
26948908 |
T |
|
| Q |
211 |
tcttttatcttggtataatattcttttacggtctca |
246 |
Q |
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|||||||||||||||| ||||||||||||||||||| |
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| T |
26948909 |
tcttttatcttggtattatattcttttacggtctca |
26948944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 2764 - 2637
Alignment:
| Q |
11 |
catcatcatgcctactcaatatttgctcataagcttctagtgagcctattaattctgtcgctgacaaagtagacaaatatttggtttgcacaatcgtggt |
110 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| |||||||||||||||||| || |||| || |||| || | |
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| T |
2764 |
catcatcatgcctactcaatattttctcataagcttctaatgagcctattaattatgtcactgacaaagtagacaaatcttcggttggctcaattgtagc |
2665 |
T |
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| Q |
111 |
aacaattgcatcatatctacgaggaata |
138 |
Q |
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||||||||||||||| || |||||||| |
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| T |
2664 |
aacaattgcatcatacttatgaggaata |
2637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 4310 - 4183
Alignment:
| Q |
11 |
catcatcatgcctactcaatatttgctcataagcttctagtgagcctattaattctgtcgctgacaaagtagacaaatatttggtttgcacaatcgtggt |
110 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| |||||||||||||||||| || |||| || |||| || | |
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| T |
4310 |
catcatcatgcctactcaatattttctcataagcttctaatgagcctattaattatgtcactgacaaagtagacaaatcttcggttggctcaattgtagc |
4211 |
T |
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| Q |
111 |
aacaattgcatcatatctacgaggaata |
138 |
Q |
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||||||||||||||| || |||||||| |
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| T |
4210 |
aacaattgcatcatacttatgaggaata |
4183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1630 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold1630
Description:
Target: scaffold1630; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 177
Target Start/End: Complemental strand, 979 - 813
Alignment:
| Q |
11 |
catcatcatgcctactcaatatttgctcataagcttctagtgagcctattaattctgtcgctgacaaagtagacaaatatttggtttgcacaatcgtggt |
110 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||| |||||||||| ||||| || ||||||||||| | || |||||||| | ||||| | | |
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| T |
979 |
catcatcatgcctactcaatctttgctcataaacttctactgagcctattgattctatcaaggacaaagtagatagatctttggttttctcaatcataga |
880 |
T |
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| Q |
111 |
aacaattgcatcatatctacgaggaatataaattcgaatttcctcaacaattcttttgtcgagaata |
177 |
Q |
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||| ||||||||||| || ||||||| ||||| |||||| ||||||||||||||||||||||||| |
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| T |
879 |
aacgattgcatcatacttataaggaatagaaattagaattttctcaacaattcttttgtcgagaata |
813 |
T |
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