View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19855_low_18 (Length: 245)
Name: NF19855_low_18
Description: NF19855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19855_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 28138658 - 28138887
Alignment:
| Q |
1 |
ttgtctgatgttagagaggtgtggtaagttgtgataggttgatgcagagcacaatgcgggagtgtgctatccaaaccaggcaaaccagtaacaagagtag |
100 |
Q |
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| T |
28138658 |
ttgtctgatgttagagaggtgtggtaagttgtgataggttgatgcagagcacaatgcgggagtgtgctatccaaaccaggcaaaccagtaacaagagtag |
28138757 |
T |
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| Q |
101 |
aagttgagggaacaacaacaattacatcattcaccaagggtggagataaacgcctccccgaatccaaggacaacaagagtgagtctgtgtttggtgactt |
200 |
Q |
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| T |
28138758 |
aagttgagggaacaacaacaattacatcattctccaagggtggagataaacgcctccccgaatccaaggacaacaagagtgagtctgtgtttggtgactt |
28138857 |
T |
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| Q |
201 |
gaactgagaggccctttcttcccttgtagt |
230 |
Q |
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| T |
28138858 |
gaactgagaggccctttcttcccttgtagt |
28138887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 33417221 - 33417157
Alignment:
| Q |
12 |
tagagaggtgtggtaagttgtgataggttgatgcagagcacaatgcgggagtgtgctatccaaac |
76 |
Q |
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| T |
33417221 |
tagagaggcgtggtaagtagtgataggttgaggcatagcaccaggcaggagtgtgctatccaaac |
33417157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 38835951 - 38835898
Alignment:
| Q |
1 |
ttgtctgatgttagagaggtgtggtaagttgtgataggttgatgcagagcacaa |
54 |
Q |
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| T |
38835951 |
ttgtctgttgatagagaggtgtggtaagtagtgataggctgaggcatagcacaa |
38835898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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