View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19855_low_2 (Length: 588)

Name: NF19855_low_2
Description: NF19855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19855_low_2
NF19855_low_2
[»] chr1 (11 HSPs)
chr1 (188-574)||(43988762-43989148)
chr1 (1-51)||(43989285-43989335)
chr1 (188-267)||(43918847-43918926)
chr1 (79-120)||(43989216-43989257)
chr1 (289-452)||(43984624-43984790)
chr1 (289-452)||(44002632-44002798)
chr1 (188-268)||(44002802-44002883)
chr1 (188-268)||(43984794-43984875)
chr1 (289-461)||(43918931-43919109)
chr1 (188-268)||(43910208-43910289)
chr1 (503-543)||(44002541-44002581)
[»] chr5 (2 HSPs)
chr5 (350-454)||(8830435-8830540)
chr5 (188-268)||(8830601-8830682)


Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 188 - 574
Target Start/End: Complemental strand, 43989148 - 43988762
Alignment:
Q  188 gctatttcttcactcttttgtttaacaaatgtagccactgatctactgctttgcttactttattgttgtttctacaggtaaaatttgagaaaatgcaaat 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43989148 gctatttcttcactcttttgtttaacaaatgtagccactgatctactgctttgcttactttattgttgtttctacaggtaaaatttgagaaaatgcaaat 43989049  T
Q  288 caaagttgacacaaatgacaaatcaaagtgcataggtagtgcttatttacaagaaacatatcccacaagcagaaggatatcaagctacaacagtattcct 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43989048 caaagttgacacaaatgacaaatcaaagtgcataggtagtgcttatttacaagaaacatatcccacaagcagaaggatatcaagctacaacagtattcct 43988949  T
Q  388 aaaagatttaaaggcaagctacatgatatagtccatagctaccactctttgccttgctaagtttattgccaagtcctctctcaaaaaaggaattgtttta 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43988948 aaaagatttaaaggcaagctacatgatatagtccatagctaccactctttgccttgctaagtttattgccaagtcctctctcaaaaaaggaattgtttta 43988849  T
Q  488 tattctaagtggattgattatgtttaatttgattttttgtttgatagttgatttggttgtaatcttcttcacatttttgtgattaat 574  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  43988848 tattctaagtggattgattatgtttaatttgattttttgtttgatagttgatttggttgtattcttcttcacatttttgtgattaat 43988762  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 43989335 - 43989285
Alignment:
Q  1 tccttctttgtcgcttcttctctcccacacgtgttctcactcataagtcag 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43989335 tccttctttgtcgcttcttctctcccacacgtgttctcactcataagtcag 43989285  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 188 - 267
Target Start/End: Original strand, 43918847 - 43918926
Alignment:
Q  188 gctatttcttcactcttttgtttaa-caaatgtagccactgatctactgctttgcttactttattgttgtttctacaggta 267  Q
    ||||||||||||||||||||||||| |||||| ||||||||| || ||| |||||||||||| ||||||||||||||||||    
T  43918847 gctatttcttcactcttttgtttaaacaaatgaagccactga-cttctgttttgcttactttgttgttgtttctacaggta 43918926  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 43989257 - 43989216
Alignment:
Q  79 cttgaattcgcaagtttgttgcttcaatataaatctcctata 120  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  43989257 cttgaattcgcaagtttgttgcttcaatataaatctcctata 43989216  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 289 - 452
Target Start/End: Complemental strand, 43984790 - 43984624
Alignment:
Q  289 aaagttgacacaaatgacaaatcaaagt-gcataggtagtgcttatttacaagaaacatatccca--caagcagaaggatatcaagctacaacagtattc 385  Q
    |||||||| ||||||||||||||||||| | ||||| ||||||  || ||||| ||| ||||| |  |||| |||| || || ||||| |||||  ||||    
T  43984790 aaagttgagacaaatgacaaatcaaagtagtataggaagtgctcctt-acaagtaacttatcctaaacaaggagaaagacataaagctgcaacaccattc 43984692  T
Q  386 ctaaaagatttaaaggcaagctacatgat-atagtccatagctaccactctttgccttgctaagttta 452  Q
    || || |||||||| |||||||||||||| |||||||||| | |||||| | | ||||||||||||||    
T  43984691 ctgaaggatttaaaagcaagctacatgatgatagtccataaccaccactatgtaccttgctaagttta 43984624  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 289 - 452
Target Start/End: Complemental strand, 44002798 - 44002632
Alignment:
Q  289 aaagttgacacaaatgacaaatcaaagt-gcataggtagtgcttatttacaagaaacatatccca--caagcagaaggatatcaagctacaacagtattc 385  Q
    |||||||| ||||||||||||||||||| | ||||| ||||||  || ||||| ||| ||||| |  |||| |||| || || ||||| |||||  ||||    
T  44002798 aaagttgagacaaatgacaaatcaaagtagtataggaagtgctcctt-acaagtaacttatcctaaacaaggagaaagacataaagctgcaacaccattc 44002700  T
Q  386 ctaaaagatttaaaggcaagctacatgat-atagtccatagctaccactctttgccttgctaagttta 452  Q
    || || |||||||| |||||||||||||| |||||||||| | |||||| | | ||||||||||||||    
T  44002699 ctgaaggatttaaaagcaagctacatgatgatagtccataaccaccactatgtaccttgctaagttta 44002632  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 188 - 268
Target Start/End: Complemental strand, 44002883 - 44002802
Alignment:
Q  188 gctatttcttcactcttttgttt-aacaaatgtagccactgatctactgctttgcttactttattgttgtttctacaggtaa 268  Q
    |||||||||||||| ||||| || ||||||| ||| || |||  ||||| ||||||||||| ||||||||||||||||||||    
T  44002883 gctatttcttcactgttttgcttgaacaaatctagtcagtgacttactgttttgcttacttcattgttgtttctacaggtaa 44002802  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 188 - 268
Target Start/End: Complemental strand, 43984875 - 43984794
Alignment:
Q  188 gctatttcttcactcttttgttt-aacaaatgtagccactgatctactgctttgcttactttattgttgtttctacaggtaa 268  Q
    |||||||||||||| |||||||| ||||||| | | ||  ||  ||||| ||||||||||| ||||||||||||||||||||    
T  43984875 gctatttcttcactgttttgtttgaacaaatcttgtcaacgacttactgttttgcttacttcattgttgtttctacaggtaa 43984794  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 461
Target Start/End: Original strand, 43918931 - 43919109
Alignment:
Q  289 aaagttgacacaaatgacaaatcaaagt-gcataggtagtgcttatttacaagaaa---catatcccacaa--gcagaaggatatcaagctacaacagta 382  Q
    |||||||| ||||||||||||||||| | | ||||| ||||||  |||||||| ||   | |||||||||   | ||||||| ||||| ||||||||  |    
T  43918931 aaagttgagacaaatgacaaatcaaaatagtataggaagtgctcctttacaagtaattacttatcccacacagggagaaggacatcaaactacaacacca 43919030  T
Q  383 ttcctaaaagatttaaaggcaagctacatgat-atagtccatagctaccactctttgccttgctaagtttattgccaagt 461  Q
     |||| || |||| ||| |||||||||| ||| ||||| ||| || |||||| | |||||||||||||||||||| ||||    
T  43919031 ctcctgaaggattcaaaagcaagctacaggatgatagttcat-gccaccactatgtgccttgctaagtttattgctaagt 43919109  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 268
Target Start/End: Original strand, 43910208 - 43910289
Alignment:
Q  188 gctatttcttcactcttttgttt-aacaaatgtagccactgatctactgctttgcttactttattgttgtttctacaggtaa 268  Q
    |||||||||||||| ||| |||| |||||||  |||||| ||  || || ||| |||||| |||||||||||||||||||||    
T  43910208 gctatttcttcactgtttagtttgaacaaatcaagccaccgacttattgtttttcttactatattgttgtttctacaggtaa 43910289  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 503 - 543
Target Start/End: Complemental strand, 44002581 - 44002541
Alignment:
Q  503 gattatgtttaatttgattttttgtttgatagttgatttgg 543  Q
    |||||||||||| |||||||  |||||||||||||||||||    
T  44002581 gattatgtttaagttgatttcatgtttgatagttgatttgg 44002541  T

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Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 350 - 454
Target Start/End: Complemental strand, 8830540 - 8830435
Alignment:
Q  350 ccacaagcagaaggatatcaagctacaacagtattcctaaaagatttaaaggcaagctacatgat-atagtccatagctaccactctttgccttgctaag 448  Q
    ||||||| ||||||| ||||||||||||||  |||||  ||||||||||| |||||||||||||| |||||||||||  |||||| | ||||||||||||    
T  8830540 ccacaaggagaaggacatcaagctacaacaccattccagaaagatttaaaagcaagctacatgatgatagtccatagtcaccactatgtgccttgctaag 8830441  T
Q  449 tttatt 454  Q
    ||||||    
T  8830440 tttatt 8830435  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 268
Target Start/End: Complemental strand, 8830682 - 8830601
Alignment:
Q  188 gctatttcttcactcttttgttt-aacaaatgtagccactgatctactgctttgcttactttattgttgtttctacaggtaa 268  Q
    |||||||||||||| |||||| | |||||||  |||||||||  || || |||||||||  ||||||||||||| |||||||    
T  8830682 gctatttcttcactgttttgtctgaacaaatcaagccactgacttattgttttgcttaccatattgttgtttctgcaggtaa 8830601  T

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