View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19855_low_21 (Length: 202)

Name: NF19855_low_21
Description: NF19855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19855_low_21
NF19855_low_21
[»] chr5 (15 HSPs)
chr5 (17-181)||(28977631-28977795)
chr5 (17-111)||(1274679-1274773)
chr5 (17-111)||(2076248-2076342)
chr5 (17-111)||(10638712-10638806)
chr5 (22-111)||(20318405-20318494)
chr5 (18-109)||(24177940-24178031)
chr5 (17-111)||(1288363-1288457)
chr5 (17-111)||(12493136-12493230)
chr5 (21-111)||(3394125-3394215)
chr5 (29-111)||(3301263-3301345)
chr5 (24-107)||(43558587-43558670)
chr5 (27-111)||(40383870-40383955)
chr5 (39-111)||(35685269-35685340)
chr5 (24-107)||(27348-27431)
chr5 (24-111)||(37123983-37124070)
[»] chr2 (15 HSPs)
chr2 (17-111)||(452390-452484)
chr2 (17-111)||(2609942-2610036)
chr2 (17-108)||(12475195-12475286)
chr2 (17-111)||(8180209-8180303)
chr2 (21-111)||(45368403-45368493)
chr2 (21-111)||(24584384-24584474)
chr2 (17-109)||(38453392-38453484)
chr2 (59-111)||(16292127-16292179)
chr2 (29-106)||(13148741-13148818)
chr2 (24-111)||(37281518-37281605)
chr2 (24-110)||(14769714-14769800)
chr2 (21-59)||(41763827-41763865)
chr2 (42-111)||(876568-876637)
chr2 (21-55)||(11992863-11992897)
chr2 (25-78)||(30743070-30743123)
[»] scaffold0018 (1 HSPs)
scaffold0018 (17-111)||(30882-30976)
[»] chr8 (10 HSPs)
chr8 (17-111)||(12492616-12492710)
chr8 (17-111)||(36566015-36566109)
chr8 (17-111)||(36544566-36544660)
chr8 (21-111)||(42854791-42854881)
chr8 (21-111)||(15216048-15216140)
chr8 (21-115)||(18849893-18849990)
chr8 (21-101)||(13588864-13588944)
chr8 (60-108)||(39706990-39707038)
chr8 (24-104)||(41445084-41445164)
chr8 (24-106)||(30579009-30579092)
[»] chr7 (20 HSPs)
chr7 (17-111)||(11593367-11593461)
chr7 (17-111)||(33350580-33350674)
chr7 (17-111)||(36651408-36651502)
chr7 (17-111)||(39907153-39907247)
chr7 (17-111)||(46356625-46356719)
chr7 (19-111)||(49028695-49028787)
chr7 (21-111)||(36870067-36870157)
chr7 (19-111)||(38897025-38897117)
chr7 (21-111)||(32630022-32630112)
chr7 (21-111)||(24177973-24178063)
chr7 (17-87)||(31004662-31004732)
chr7 (38-105)||(21520228-21520295)
chr7 (39-111)||(38606452-38606524)
chr7 (46-106)||(48918817-48918877)
chr7 (17-68)||(37616373-37616424)
chr7 (49-111)||(20499523-20499585)
chr7 (28-111)||(24426274-24426357)
chr7 (49-111)||(48055623-48055685)
chr7 (22-111)||(23087894-23087983)
chr7 (39-111)||(43793829-43793901)
[»] chr6 (13 HSPs)
chr6 (17-111)||(6082814-6082908)
chr6 (21-112)||(20428415-20428506)
chr6 (21-106)||(5258928-5259013)
chr6 (22-111)||(5631231-5631320)
chr6 (21-111)||(9706189-9706280)
chr6 (21-108)||(30670305-30670392)
chr6 (21-103)||(33495629-33495711)
chr6 (24-101)||(26291205-26291283)
chr6 (21-107)||(2208180-2208266)
chr6 (21-106)||(2680828-2680913)
chr6 (59-111)||(3629644-3629696)
chr6 (24-107)||(27790574-27790657)
chr6 (39-111)||(9369197-9369269)
[»] chr3 (11 HSPs)
chr3 (17-111)||(52138242-52138336)
chr3 (17-111)||(51448483-51448577)
chr3 (45-111)||(9258300-9258366)
chr3 (24-106)||(19736588-19736667)
chr3 (24-106)||(19757406-19757485)
chr3 (21-111)||(38849508-38849598)
chr3 (21-77)||(25190827-25190883)
chr3 (30-107)||(29816923-29817000)
chr3 (17-53)||(47542485-47542521)
chr3 (55-111)||(50630133-50630189)
chr3 (25-106)||(48221200-48221281)
[»] chr1 (13 HSPs)
chr1 (17-111)||(43241155-43241249)
chr1 (17-110)||(51601473-51601566)
chr1 (17-111)||(51441538-51441632)
chr1 (17-111)||(8671335-8671428)
chr1 (17-111)||(49348168-49348262)
chr1 (21-111)||(32083523-32083613)
chr1 (24-107)||(37463643-37463726)
chr1 (26-107)||(46227087-46227168)
chr1 (30-75)||(13820549-13820594)
chr1 (41-98)||(35829191-35829248)
chr1 (39-111)||(40419095-40419167)
chr1 (30-96)||(28528010-28528076)
chr1 (25-69)||(29173374-29173418)
[»] chr4 (16 HSPs)
chr4 (16-111)||(48623300-48623395)
chr4 (17-111)||(1777789-1777883)
chr4 (17-111)||(23907075-23907170)
chr4 (17-111)||(435646-435737)
chr4 (21-108)||(27450951-27451038)
chr4 (21-111)||(39707876-39707966)
chr4 (21-111)||(1212085-1212175)
chr4 (17-77)||(53707242-53707302)
chr4 (17-77)||(56374738-56374798)
chr4 (24-111)||(10776200-10776287)
chr4 (21-89)||(16002350-16002418)
chr4 (22-111)||(17666804-17666893)
chr4 (39-111)||(55769173-55769245)
chr4 (73-111)||(53704024-53704062)
chr4 (39-111)||(55833429-55833501)
chr4 (22-111)||(17668102-17668191)
[»] scaffold0113 (1 HSPs)
scaffold0113 (21-93)||(12370-12442)
[»] scaffold0286 (1 HSPs)
scaffold0286 (21-107)||(279-365)
[»] scaffold0220 (1 HSPs)
scaffold0220 (41-113)||(25011-25083)
[»] scaffold0045 (1 HSPs)
scaffold0045 (21-107)||(88708-88798)


Alignment Details
Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 28977631 - 28977795
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataaagaac 116  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28977631 ccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaagaac 28977730  T
Q  117 aaacaacatcctcttaaatgttgtttgttcttttatctattaaataaaaaatgtgtagggtagat 181  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  28977731 aaacaacatcctcttaaatgttatttgttcttttatctattaaataaaaaatgtgtagggaagat 28977795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 1274773 - 1274679
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1274773 ccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 1274679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 2076248 - 2076342
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2076248 ccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 2076342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 10638806 - 10638712
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10638806 ccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 10638712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 20318494 - 20318405
Alignment:
Q  22 aagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20318494 aagactacatcatctgcaaaaagcatacatctcggtgctaactcttgaatgtgtttcgtcaatacatccaaaactaaagtaaaaagataa 20318405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 24178031 - 24177940
Alignment:
Q  18 caccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagat 109  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  24178031 caccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatcccaaactaaagtaaaaagat 24177940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 1288363 - 1288457
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  1288363 ccaccaagaccacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaatataa 1288457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 12493136 - 12493230
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||| ||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12493136 ccaccaagattacatcatctgcaaaaagcatacatcttggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 12493230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 3394215 - 3394125
Alignment:
Q  21 caagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||| ||||||    
T  3394215 caagactgcatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcagtacatccaaaactagagtaaagagataa 3394125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 3301345 - 3301263
Alignment:
Q  29 catcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||| |||||| ||||||    
T  3301345 catcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttctgtcagtacatccaaaactagagtaaagagataa 3301263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 43558587 - 43558670
Alignment:
Q  24 gactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaag 107  Q
    |||||||||||||  |||| ||||| ||||||||| || |||||| ||||||||||| | |||||||||||||||||| |||||    
T  43558587 gactacatcatctacaaaacgcatatatctcggtgttagctcttggatgtgttccgtaagtacatccaaaactaaagtgaaaag 43558670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 40383955 - 40383870
Alignment:
Q  27 tacatcatctgta-aaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||| ||||||| ||||||||||||||| |||||| ||||||||| ||||  || | ||||||||| ||||||||||||||||||    
T  40383955 tacatgatctgtataaaagcatacatctcagtgctagctcttgaatatgttatgtaagtacatccaagactaaagtaaaaagataa 40383870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 35685340 - 35685269
Alignment:
Q  39 aaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||| ||||||||| ||||||| |||||||||||||||| | ||||| ||||||||||||| ||||||||||    
T  35685340 aaaaaacatacatcttggtgctacctcttgaatgtgttccataaatac-tccaaaactaaagcaaaaagataa 35685269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 27431 - 27348
Alignment:
Q  24 gactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaag 107  Q
    ||||||||||||   ||||| ||||||||||| |||||||||||| || || ||||  | |||||||||||| ||| |||||||    
T  27431 gactacatcatcgacaaaaaacatacatctcgttgctaactcttggatatggtccgcaagtacatccaaaacaaaaataaaaag 27348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 111
Target Start/End: Complemental strand, 37124070 - 37123983
Alignment:
Q  24 gactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    |||||| ||||||  ||||||||||  ||||| | ||| || |||||||| |||  | |||||||||||||||||||||| |||||||    
T  37124070 gactacctcatctacaaaaagcatatgtctcgatactagctattgaatgtattctataaatacatccaaaactaaagtaagaagataa 37123983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 452390 - 452484
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  452390 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 452484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 2610036 - 2609942
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2610036 ccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 2609942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 12475195 - 12475286
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaaga 108  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12475195 ccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaaga 12475286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 8180303 - 8180209
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  8180303 ccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgtttcgtcaatacatccaaaactaaagtaaaaagataa 8180209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 45368403 - 45368493
Alignment:
Q  21 caagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45368403 caagactacatcatctgcaaaaagcatacatctcggtgctaattcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 45368493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 24584384 - 24584474
Alignment:
Q  21 caagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||| ||||| |||||||||||||| ||||||||| ||||||||||| | ||||||||||||||||||||||||||||    
T  24584384 caagactacatcatctgcaaaaaacatacatctcggtgataactcttggatgtgttccgttagtacatccaaaactaaagtaaaaagataa 24584474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 38453392 - 38453484
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagat 109  Q
    ||||||||||||||||||||| ||||  |||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||| ||||    
T  38453392 ccaccaagactacatcatctgcaaaatacatacatctcggtgctaactcttggatgtgttttgtcaatacatccaaaactaaagtaaagagat 38453484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 16292179 - 16292127
Alignment:
Q  59 ctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16292179 ctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 16292127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 13148818 - 13148741
Alignment:
Q  29 catcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaa 106  Q
    ||||||||  |||| ||||||||||  |||||| |||||| |||||||| || | |||||||||||||||||||||||    
T  13148818 catcatctacaaaatgcatacatcttagtgctagctcttggatgtgttctgtaagtacatccaaaactaaagtaaaaa 13148741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 111
Target Start/End: Complemental strand, 37281605 - 37281518
Alignment:
Q  24 gactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||| |||||||  |||||||||||| || ||||||||| | || ||||||| ||| | |||||| ||| |||||||||||||||||    
T  37281605 gactaaatcatctacaaaaagcatacaccttggtgctaacccatggatgtgtttcgtaagtacatctaaacctaaagtaaaaagataa 37281518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 14769800 - 14769714
Alignment:
Q  24 gactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagata 110  Q
    ||||||||||||   ||||| ||||||| | ||||||| |||||||||||||   || | ||||||||||| |||||||||||||||    
T  14769800 gactacatcatcgcaaaaaaacatacatattggtgctagctcttgaatgtgtgatgtaagtacatccaaaattaaagtaaaaagata 14769714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 41763827 - 41763865
Alignment:
Q  21 caagactacatcatctgtaaaaagcatacatctcggtgc 59  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  41763827 caagactacatcatctgcaaaaagcatacatctcggtgc 41763865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 876637 - 876568
Alignment:
Q  42 aagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    |||||||||||| ||||||  |||||| ||||||||||| | |||||||||||| || || |||||||||    
T  876637 aagcatacatcttggtgctcgctcttggatgtgttccgtaagtacatccaaaacgaaggtgaaaagataa 876568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 11992863 - 11992897
Alignment:
Q  21 caagactacatcatctgtaaaaagcatacatctcg 55  Q
    ||||||||||||||||| |||||||||||||||||    
T  11992863 caagactacatcatctgcaaaaagcatacatctcg 11992897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 30743123 - 30743070
Alignment:
Q  25 actacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttcc 78  Q
    ||||||||||||| ||||  ||||||||||||| |||| ||||| |||||||||    
T  30743123 actacatcatctgcaaaattcatacatctcggtactaattcttggatgtgttcc 30743070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 30976 - 30882
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30976 ccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 30882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 7e-42; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 12492616 - 12492710
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12492616 ccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 12492710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 36566015 - 36566109
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36566015 ccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 36566109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 36544660 - 36544566
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||    
T  36544660 ccaccaagactacatcatctgaaaaaagcatacatctcagtgctaactcttggatgtgttgcatcaatacatccaaaactaaagtaaaaagataa 36544566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 42854791 - 42854881
Alignment:
Q  21 caagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||  |||  |||||||||||||||||||||||||||    
T  42854791 caagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttctatcaggacatccaaaactaaagtaaaaagataa 42854881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 15216048 - 15216140
Alignment:
Q  21 caagactacatcatctgtaaaaag--catacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    |||||||||||| |||| |||||   |||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||    
T  15216048 caagactacatcgtctgcaaaaaaaacatacatctcggtgctaactcttggatgtgttctgtcagtacatccaaaactaaagtaaaaagataa 15216140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 18849893 - 18849990
Alignment:
Q  21 caagactacatcatctgtaaaaag---catacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataaagaa 115  Q
    ||||||||||||||||| |||||    ||||||||| |||||||| | |||  |||||||||| |||| ||| ||||||||| |||||||||||||||    
T  18849893 caagactacatcatctgcaaaaaaaaacatacatcttggtgctaattgttgggtgtgttccgtaaatatatctaaaactaaaataaaaagataaagaa 18849990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 13588944 - 13588864
Alignment:
Q  21 caagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagt 101  Q
    |||||||||||||||   ||||||||||||||| ||||| |||||||| || |||||||| || | |||||||||| ||||    
T  13588944 caagactacatcatcaccaaaaagcatacatcttggtgcaaactcttggatatgttccgtaaacatatccaaaactgaagt 13588864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 39707038 - 39706990
Alignment:
Q  60 taactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaaga 108  Q
    ||||||||||||||||||| | | |||| ||||||||||||||||||||    
T  39707038 taactcttgaatgtgttccataactacacccaaaactaaagtaaaaaga 39706990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 41445084 - 41445164
Alignment:
Q  24 gactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaa 104  Q
    |||||||||||||  |||||  | |||||||||||||| || ||| ||||||| ||| | ||||||||||| |||||||||    
T  41445084 gactacatcatctacaaaaaatagacatctcggtgctagcttttggatgtgtttcgtaattacatccaaaattaaagtaaa 41445164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 30579009 - 30579092
Alignment:
Q  24 gactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaa-ctaaagtaaaaa 106  Q
    ||||||| |||||  |||||||| ||||||| |||||| |||||| |||||||| || | |||||| |||| ||||||||||||    
T  30579009 gactacaccatcttcaaaaagcaaacatctcagtgctagctcttgtatgtgttctgtaagtacatcaaaaaactaaagtaaaaa 30579092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 7e-42; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 11593461 - 11593367
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11593461 ccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 11593367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 33350580 - 33350674
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33350580 ccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 33350674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 36651502 - 36651408
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  36651502 ccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatctaaaactaaagtaaaaagataa 36651408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 39907153 - 39907247
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  39907153 ccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtgaaaagataa 39907247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 46356625 - 46356719
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46356625 ccaccaaggctacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 46356719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 49028787 - 49028695
Alignment:
Q  19 accaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  49028787 accaagactacatcatctgcaaaaagcatacatcttggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 49028695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 36870067 - 36870157
Alignment:
Q  21 caagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  36870067 caagactacatcatctgcaaaaagcatacatctcggtgctagctcttggatgtgttccgtcagtacatccaaaactaaagtaaaaagataa 36870157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 38897117 - 38897025
Alignment:
Q  19 accaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||||| |||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  38897117 accaagactacatcatctgcaaaatgaatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagcaaaaagataa 38897025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 32630112 - 32630022
Alignment:
Q  21 caagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||| |||||||||||||    
T  32630112 caagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgttagtacatccaaaactagagtaaaaagataa 32630022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 24177973 - 24178063
Alignment:
Q  21 caagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||| |||| || ||||||||||||||||||||||||||||||   ||||||||||| |||||||||||||||| |||||||||||    
T  24177973 caagactacgtcatttgcaaaaagcatacatctcggtgctaactcttgggcgtgttccgtcagtacatccaaaactaaaataaaaagataa 24178063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 31004732 - 31004662
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaataca 87  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  31004732 ccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccctcaataca 31004662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 21520228 - 21520295
Alignment:
Q  38 taaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaa 105  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||    
T  21520228 taaaaagcatacatctcggtgctaactcttggatgtgttccgtaaatacatccaaaactaaattaaaa 21520295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 38606524 - 38606452
Alignment:
Q  39 aaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||| |||||||||||||| |||||||| |||| ||||||||||||||||| ||||||||||    
T  38606524 aaaaagcatacatcttggtgctaactcttggatgtgttctgtcagtacatccaaaactaaagcaaaaagataa 38606452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 48918877 - 48918817
Alignment:
Q  46 atacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaa 106  Q
    ||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  48918877 atacatctcagtgttaactcttgaatgtgttccgtcgatacatccaaaactaaagtaaaaa 48918817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 37616424 - 37616373
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttg 68  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37616424 ccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttg 37616373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 20499585 - 20499523
Alignment:
Q  49 catctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||| |||||| ||||||||||  | ||||||||||| ||||||||||||||||    
T  20499585 catctcggtgctagctcttggatgtgttccgcaagtacatccaaaagtaaagtaaaaagataa 20499523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 24426274 - 24426357
Alignment:
Q  28 acatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    |||||||| | |||||  |||||||||| ||||||||||| |||||||| | | | ||||||||||| || |||||||||||||    
T  24426274 acatcatccgcaaaaaatatacatctcgatgctaactcttaaatgtgttgcataagtacatccaaaattatagtaaaaagataa 24426357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 48055623 - 48055685
Alignment:
Q  49 catctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||| |||||| ||||| ||||    ||||||||||| ||||||||||||||||    
T  48055623 catctcggtgctagctcttggatgtgctccgcaggtacatccaaaagtaaagtaaaaagataa 48055685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 23087894 - 23087983
Alignment:
Q  22 aagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    |||||||||||||||| ||||  |||||||||| |||||| || ||| |||||||  || | || |||||||||||| || || ||||||    
T  23087894 aagactacatcatctgcaaaatacatacatctcagtgctatctgttggatgtgttttgtaagtatatccaaaactaatgttaatagataa 23087983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 43793829 - 43793901
Alignment:
Q  39 aaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||| ||||||  |||||| |||||||  || | ||||||||| ||||| || |||||||||    
T  43793829 aaaaagcatacatcttggtgctcgctcttggatgtgttttgtaagtacatccaacactaaggtgaaaagataa 43793901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 7e-42; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 6082908 - 6082814
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6082908 ccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 6082814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 20428415 - 20428506
Alignment:
Q  21 caagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataaa 112  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||| ||||||||    
T  20428415 caagactacatcatctgcaaaaagcatacatctcggtgctaactcttgaatgtgttccgtaagtacatccaaagctaaagtaataagataaa 20428506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 5258928 - 5259013
Alignment:
Q  21 caagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaa 106  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  5258928 caagacttcatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcagtacatccaaaactaaagtaaaaa 5259013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 5631320 - 5631231
Alignment:
Q  22 aagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||| ||||| || ||||| ||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  5631320 aagactagatcatatgcaaaaaacatgcatctcggtgctaactcttggatgtgttccgtcagtacatccaaaactaaagtaaaaagataa 5631231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 9706280 - 9706189
Alignment:
Q  21 caagactacatcatctgt-aaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    |||||||||||||| ||  |||||||||||| ||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||    
T  9706280 caagactacatcatttgggaaaaagcatacaactcggtgctaactcttggatgtgtttcgtcagtacatccaaaactaaagtaaaaagataa 9706189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 30670392 - 30670305
Alignment:
Q  21 caagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaaga 108  Q
    ||||||||||||||||| ||||||||||||||||  |||||||||||| |||| |||||||| |||| ||||||||||||||||||||    
T  30670392 caagactacatcatctgcaaaaagcatacatctcaatgctaactcttggatgtattccgtcagtacacccaaaactaaagtaaaaaga 30670305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 33495711 - 33495629
Alignment:
Q  21 caagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaa 103  Q
    |||||||||||||| || ||||||||||||||||| |||||| ||||| ||||||||||||| ||||| ||||||||||||||    
T  33495711 caagactacatcatatgcaaaaagcatacatctcgatgctaaatcttggatgtgttccgtcagtacattcaaaactaaagtaa 33495629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 26291283 - 26291205
Alignment:
Q  24 gactacatcatctgtaaaaa-gcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagt 101  Q
    |||||||||||||||||||| ||||||||| ||||| ||||||||| ||||||||||| ||||||||||||| ||||||    
T  26291283 gactacatcatctgtaaaaaagcatacatcacggtgttaactcttggatgtgttccgtaaatacatccaaaattaaagt 26291205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 2208180 - 2208266
Alignment:
Q  21 caagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaag 107  Q
    |||||||||||||| ||  |||  | ||||||| |||||||||||||| ||||||||||| | ||||||||||||||||||||||||    
T  2208180 caagactacatcatttgccaaagtcgtacatcttggtgctaactcttggatgtgttccgtaagtacatccaaaactaaagtaaaaag 2208266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 2680828 - 2680913
Alignment:
Q  21 caagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaa 106  Q
    ||||||||| ||||| | |||| | |||||||||| ||||||| |||| |||||||  || | |||||||||||||||||||||||    
T  2680828 caagactacgtcatccgcaaaatgtatacatctcgatgctaacacttggatgtgttatgtaagtacatccaaaactaaagtaaaaa 2680913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 3629696 - 3629644
Alignment:
Q  59 ctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    |||| ||||||||||||||| | | ||||||||||||||||||||||||||||    
T  3629696 ctaaatcttgaatgtgttccataagtacatccaaaactaaagtaaaaagataa 3629644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 27790657 - 27790574
Alignment:
Q  24 gactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaag 107  Q
    ||||||||||| ||| |||||||||||||| | |||||||| ||| ||||||| | | | | ||| ||||||||||||||||||    
T  27790657 gactacatcatatgtgaaaagcatacatcttgatgctaacttttggatgtgtttcataagtgcattcaaaactaaagtaaaaag 27790574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 9369197 - 9369269
Alignment:
Q  39 aaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||| ||||||||| ||||||  || ||| ||||||| ||| | ||||||||||||||| || |||||||||    
T  9369197 aaaaaacatacatcttggtgctcgcttttggatgtgtttcgtaagtacatccaaaactaaggtgaaaagataa 9369269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 7e-42; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 52138336 - 52138242
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  52138336 ccaccaagactacatcatgtgtaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 52138242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 51448483 - 51448577
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  51448483 ccaccaagactacatcatctgcaaaaagcatacatctcgatgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 51448577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 9258366 - 9258300
Alignment:
Q  45 catacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    |||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||    
T  9258366 catacatctcggtgctaactcttggatgtgttccgtaagtacatccaaaactaaagtaaaaagataa 9258300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 19736667 - 19736588
Alignment:
Q  24 gactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaa 106  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||| ||||||||||||   ||||||||||||||||||||||    
T  19736667 gactgcatcatctgcaaaaagcatacatcttggtgctaactcttggatgtgttccgtc---acatccaaaactaaagtaaaaa 19736588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 19757485 - 19757406
Alignment:
Q  24 gactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaa 106  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||| ||||||||||||   ||||||||||||||||||||||    
T  19757485 gactgcatcatctgcaaaaagcatacatcttggtgctaactcttggatgtgttccgtc---acatccaaaactaaagtaaaaa 19757406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 38849598 - 38849508
Alignment:
Q  21 caagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||  |||||||||||||||||||||| ||||||| | |||||||| |  ||||||||||||||||  ||||||||||    
T  38849598 caagactacatcatctacaaaaagcatacatctcggtgcttactcttggacgtgttccgcccgtacatccaaaactaaataaaaaagataa 38849508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 25190883 - 25190827
Alignment:
Q  21 caagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttc 77  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  25190883 caagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttc 25190827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 29817000 - 29816923
Alignment:
Q  30 atcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaag 107  Q
    |||||||  ||||| |||||||||||||||||||||| | |||||||  || | |||||||||| |||| ||||||||    
T  29817000 atcatcttcaaaaaacatacatctcggtgctaactctaggatgtgttttgtaagtacatccaaacctaaggtaaaaag 29816923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 47542485 - 47542521
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatct 53  Q
    ||||||||||||||||||||| |||||||||||||||    
T  47542485 ccaccaagactacatcatctgcaaaaagcatacatct 47542521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 50630133 - 50630189
Alignment:
Q  55 ggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||| | |||| ||||||||||| | || |||||||||||||||||||||||||    
T  50630133 ggtgctagcacttggatgtgttccgtaagtaaatccaaaactaaagtaaaaagataa 50630189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 48221281 - 48221200
Alignment:
Q  25 actacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaa 106  Q
    |||||||||| || ||| ||  ||||||||| |||||||||||| |||||||  |  | |||||| ||||||||||||||||    
T  48221281 actacatcatatgcaaagagtgtacatctcgatgctaactcttggatgtgttttgcaagtacatctaaaactaaagtaaaaa 48221200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 43241155 - 43241249
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43241155 ccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 43241249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 51601566 - 51601473
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagata 110  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  51601566 ccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagata 51601473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 51441538 - 51441632
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  51441538 ccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagaaaaaagataa 51441632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 8671428 - 8671335
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  8671428 ccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacat-caaaactaaagtaaaaagataa 8671335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 49348168 - 49348262
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||| ||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  49348168 ccaccgagactacatcatctacaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 49348262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 32083523 - 32083613
Alignment:
Q  21 caagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||| |||||||| || |||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||    
T  32083523 caagattacatcatttgcaaaaagcatacatctcggtgctaactcttggatgtgttctgtcagtacatccaaaactaaagtaaaaagataa 32083613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 37463643 - 37463726
Alignment:
Q  24 gactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaag 107  Q
    |||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||| |  |||||||||||||||||||||||    
T  37463643 gactacgtcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtaagaacatccaaaactaaagtaaaaag 37463726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 46227087 - 46227168
Alignment:
Q  26 ctacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaag 107  Q
    ||||||||| || |||| |||||||||| |||||||||||||| | ||||| ||| | ||||||||||||||||||||||||    
T  46227087 ctacatcatatgcaaaaggcatacatcttggtgctaactcttggacgtgtttcgtaagtacatccaaaactaaagtaaaaag 46227168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 13820594 - 13820549
Alignment:
Q  30 atcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgt 75  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||    
T  13820594 atcatctgcaaaaagcatacatctcggtgctaactcttggatgtgt 13820549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 35829191 - 35829248
Alignment:
Q  41 aaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaa 98  Q
    ||||||||||| ||||||||| |||||| |||||||| || | |||||||||||||||    
T  35829191 aaagcatacatatcggtgctagctcttggatgtgttctgtaagtacatccaaaactaa 35829248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 40419167 - 40419095
Alignment:
Q  39 aaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    |||||||| || ||| |||| | ||||||| ||||||||||| | ||||||||||||||| || |||||||||    
T  40419167 aaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatccaaaactaaggtgaaaagataa 40419095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 28528076 - 28528010
Alignment:
Q  30 atcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaact 96  Q
    |||||||| ||| ||||| ||||| |||||| | ||||| ||||||||||| | |||||||||||||    
T  28528076 atcatctgcaaacagcatgcatcttggtgctcaatcttggatgtgttccgtaagtacatccaaaact 28528010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 29173374 - 29173418
Alignment:
Q  25 actacatcatctgtaaaaagcatacatctcggtgctaactcttga 69  Q
    |||| |||||||| |||| |||||||||| |||||||||||||||    
T  29173374 actatatcatctgcaaaatgcatacatctaggtgctaactcttga 29173418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 4e-40; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 48623300 - 48623395
Alignment:
Q  16 tccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  48623300 tccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttacgtcaatacatccaaaactaaagtaaaaagataa 48623395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 1777789 - 1777883
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  1777789 ccaccaagactacatcatctgcataaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagttaaaagataa 1777883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 23907075 - 23907170
Alignment:
Q  17 ccaccaagactacatcatct-gtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  23907075 ccaccaagactacatcatcttgcaaaaagcatacatctcggtgctaactcttggttgtgttccgtcaatacatccaaaactaaagtaaaaagataa 23907170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 435737 - 435646
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||   || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  435737 ccaccaagactacatc---tgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 435646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 27450951 - 27451038
Alignment:
Q  21 caagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaaga 108  Q
    ||||||||||||||| | |||||||||||||||||||| ||||||||| ||||||| ||| | |||||||||||||||||||||||||    
T  27450951 caagactacatcatcggcaaaaagcatacatctcggtgttaactcttggatgtgtttcgttagtacatccaaaactaaagtaaaaaga 27451038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 39707966 - 39707876
Alignment:
Q  21 caagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||| ||||| ||||||| ||||||| |||||||| |||||||| || | ||||||||||||||||||||||||||||    
T  39707966 caagactacatcatctgcaaaaaacatacatatcggtgcaaactcttggatgtgttctgtaagtacatccaaaactaaagtaaaaagataa 39707876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 1212085 - 1212175
Alignment:
Q  21 caagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||  |||||||  || | |||||||||||||||||| |||||||||    
T  1212085 caagactacatcatctccaaaaagcatacatctcggtgctaactcttagatgtgttatgtaagtacatccaaaactaaagtgaaaagataa 1212175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 53707302 - 53707242
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttc 77  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  53707302 ccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttc 53707242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 56374798 - 56374738
Alignment:
Q  17 ccaccaagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttc 77  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  56374798 ccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttc 56374738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 10776200 - 10776287
Alignment:
Q  24 gactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||| |||||||| ||||||||||||||| ||||    |||||||||||||||||| | |||||||||||||||| | |||||||||    
T  10776200 gactatatcatctgcaaaaagcatacatcttggtgtccgctcttgaatgtgttccgtaagtacatccaaaactaaaatgaaaagataa 10776287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 16002418 - 16002350
Alignment:
Q  21 caagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatc 89  Q
    ||||||||| |||| || ||||| |||||||||||||||||||||||| ||||||||||| | ||||||    
T  16002418 caagactacgtcatatgcaaaaaacatacatctcggtgctaactcttggatgtgttccgtaagtacatc 16002350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 17666804 - 17666893
Alignment:
Q  22 aagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    ||||||||||||| |  |||| ||||||||||||||||||  | ||| |||||||  || | ||||||||||||||| ||||||||||||    
T  17666804 aagactacatcatattcaaaatgcatacatctcggtgctagttgttggatgtgttatgtaagtacatccaaaactaatgtaaaaagataa 17666893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 55769173 - 55769245
Alignment:
Q  39 aaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    |||||||||| | ||||| | ||  ||||| ||||||||| | ||||||||||||||||||||||||||||||    
T  55769173 aaaaagcatagaactcggagttaggtcttggatgtgttccataaatacatccaaaactaaagtaaaaagataa 55769245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 73 - 111
Target Start/End: Complemental strand, 53704062 - 53704024
Alignment:
Q  73 tgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  53704062 tgttccatcaatacatccaaaactaaagtaaaaagataa 53704024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 55833429 - 55833501
Alignment:
Q  39 aaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    |||||||||| | ||||| | ||  ||||| ||||||||| | || |||||||||||||||||||||||||||    
T  55833429 aaaaagcatagaactcggagttaggtcttggatgtgttccataaacacatccaaaactaaagtaaaaagataa 55833501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 17668102 - 17668191
Alignment:
Q  22 aagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataa 111  Q
    |||||||||||||||  ||||  ||||||||| |||||||  | ||| ||||||| ||| | |||| ||||||| || ||||||||||||    
T  17668102 aagactacatcatcttcaaaacacatacatcttggtgctagttgttggatgtgtttcgtaagtacacccaaaacaaatgtaaaaagataa 17668191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 12370 - 12442
Alignment:
Q  21 caagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaa 93  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12370 caagactacatcatcttcaaaaagcatacatctcggtgctaactcttgaatgtgttctgtcaatacatccaaa 12442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 279 - 365
Alignment:
Q  21 caagactacatcatctgtaaaaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaag 107  Q
    |||||||||||||| ||  |||  | ||||||| |||||||||||||| ||||||||||| | ||||||||||||||||||||||||    
T  279 caagactacatcatttgccaaagtcgtacatcttggtgctaactcttggatgtgttccgtaagtacatccaaaactaaagtaaaaag 365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 25011 - 25083
Alignment:
Q  41 aaagcatacatctcggtgctaactcttgaatgtgttccgtcaatacatccaaaactaaagtaaaaagataaag 113  Q
    |||| ||| ||||||||||||||||||  ||||||||| | |  |||| ||||||||||||||||||||||||    
T  25011 aaagaatagatctcggtgctaactcttagatgtgttccataagaacattcaaaactaaagtaaaaagataaag 25083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 88708 - 88798
Alignment:
Q  21 caagactacatcatctgtaaaaagcatacatctcggtgctaact----cttgaatgtgttccgtcaatacatccaaaactaaagtaaaaag 107  Q
    ||||||||||||||||| |||||||||||||||| ||||||| |    |||  ||||||||| | | ||||||||||| ||| ||||||||    
T  88708 caagactacatcatctgcaaaaagcatacatctcagtgctaattaacccttagatgtgttcctttagtacatccaaaagtaatgtaaaaag 88798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University