View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19855_low_3 (Length: 458)

Name: NF19855_low_3
Description: NF19855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19855_low_3
NF19855_low_3
[»] chr6 (4 HSPs)
chr6 (20-458)||(28138199-28138638)
chr6 (187-258)||(6982835-6982906)
chr6 (336-416)||(30587503-30587579)
chr6 (189-252)||(10501975-10502038)
[»] chr2 (6 HSPs)
chr2 (20-127)||(18559840-18559948)
chr2 (46-88)||(21950067-21950109)
chr2 (193-258)||(21949895-21949960)
chr2 (193-262)||(9446973-9447042)
chr2 (209-262)||(41411516-41411569)
chr2 (193-258)||(31320254-31320319)
[»] chr5 (4 HSPs)
chr5 (171-258)||(33417416-33417503)
chr5 (38-121)||(33417282-33417366)
chr5 (193-262)||(31610042-31610111)
chr5 (168-207)||(15867381-15867420)
[»] chr8 (3 HSPs)
chr8 (40-127)||(40715799-40715887)
chr8 (168-258)||(6596498-6596588)
chr8 (49-122)||(6596378-6596452)
[»] chr4 (4 HSPs)
chr4 (20-122)||(2048818-2048920)
chr4 (188-262)||(39735815-39735889)
chr4 (168-253)||(2048966-2049051)
chr4 (187-256)||(3958945-3959014)
[»] chr3 (1 HSPs)
chr3 (321-433)||(4292984-4293093)
[»] chr7 (5 HSPs)
chr7 (168-258)||(8308208-8308298)
chr7 (20-122)||(38835974-38836075)
chr7 (168-253)||(38836121-38836206)
chr7 (187-258)||(49094543-49094614)
chr7 (187-259)||(30559359-30559431)
[»] scaffold0098 (1 HSPs)
scaffold0098 (40-88)||(21800-21848)
[»] chr1 (3 HSPs)
chr1 (40-126)||(17937621-17937709)
chr1 (189-262)||(42080685-42080758)
chr1 (40-88)||(17867361-17867409)
[»] scaffold0141 (1 HSPs)
scaffold0141 (190-256)||(16533-16599)


Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 20 - 458
Target Start/End: Complemental strand, 28138638 - 28138199
Alignment:
Q  20 gtgcatgctgcaaatgtttgttcttctgaagctcagagaagtgtggacattttacaaaagttttgggggattatactaatggagagcatgattctagcct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138638 gtgcatgctgcaaatgtttgttcttctgaagctcagagaagtgtggacattttacaaaagttttgggggattatactaatggagagcatgattctagcct 28138539  T
Q  120 tgtctgtctggcaacaaccaagaacnnnnnnnnnnnnnnnnnnnnnnntagacaagtttcaccgaagagcacaagtagtaagcacatataaacgcgttct 219  Q
    |||||||||||||||||||||||||                       ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28138538 tgtctgtctggcaacaaccaagaacaaaaaggaaaaaaagcagaaaaatagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttct 28138439  T
Q  220 aaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgtatttgttgtttgacagtttcctttctttggtttactagcaaagctatgcttctcgcc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138438 aaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgtatttgttgtttgacagtttcctttctttggtttactagcaaagctatgcttctcgcc 28138339  T
Q  320 ctttcttttatcagagacattttggtctccatttttagattctctcattaatactgtaatagggtgcagacccactcctgccgattttaatgcatttctt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138338 ctttcttttatcagagacattttggtctccatttttagattctctcattaatactgtaatagggtgcagacccactcctgccgattttaatgcatttctt 28138239  T
Q  420 agcctttatcaaaaga-gtacagtcgtttaattcagccaa 458  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  28138238 agcctttatcaaaaaaggtacagtcgtttaattcagccaa 28138199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 6982835 - 6982906
Alignment:
Q  187 agcacaagtagtaagcacatataaacgcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 258  Q
    |||| ||||||| |||||||| |||| ||||| |||||||||||| ||||||| |||| |||||||||||||    
T  6982835 agcataagtagtgagcacatacaaactcgttcaaaaaagggtgtaatcaaaagcaatcttaaatatttgtga 6982906  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 336 - 416
Target Start/End: Original strand, 30587503 - 30587579
Alignment:
Q  336 acattttggtctccatttttagattctctcattaatactgtaatagggtgcagacccactcctgccga-ttttaatgcattt 416  Q
    |||||||||||| | ||||||||||||||||||     ||||||||||||||| |||||||||| | | |||||||||||||    
T  30587503 acattttggtctacttttttagattctctcatt-----tgtaatagggtgcaggcccactcctgactatttttaatgcattt 30587579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 10502038 - 10501975
Alignment:
Q  189 cacaagtagtaagcacatataaacgcgttctaaaaagggtgtagtcaaaagtaatcctaaatat 252  Q
    ||||||||||||||||||  |||| ||||| |||||||||||| | ||||| ||||| ||||||    
T  10502038 cacaagtagtaagcacatccaaactcgttccaaaaagggtgtaataaaaagcaatcccaaatat 10501975  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 18559948 - 18559840
Alignment:
Q  20 gtgcatgctgcaaatgtttgttcttctgaagctcagagaagtgtggacattttacaaaagttttg-ggggattatactaatggagagcatgattctagcc 118  Q
    |||||| |||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||  ||||| || ||||||     
T  18559948 gtgcatactgcaactgtttgttcttctgaagttcagagaagtgtgaacattttacaaaagttttgaggggattatactaatgaggagcacgaatctagct 18559849  T
Q  119 ttgtctgtc 127  Q
    |||||||||    
T  18559848 ttgtctgtc 18559840  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 21950109 - 21950067
Alignment:
Q  46 tgaagctcagagaagtgtggacattttacaaaagttttggggg 88  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21950109 tgaagctcagagaagtgtggacattttacaaaagttttggggg 21950067  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 21949960 - 21949895
Alignment:
Q  193 agtagtaagcacatataaacgcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 258  Q
    |||||| |||||||| |||| |||||||||||||||||| ||||||| ||||| ||||||||||||    
T  21949960 agtagtgagcacatacaaactcgttctaaaaagggtgtaatcaaaagcaatcccaaatatttgtga 21949895  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 9446973 - 9447042
Alignment:
Q  193 agtagtaagcacatataaacgcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 262  Q
    |||||| |||||| | |||||||||| |||||||||||  ||||||| ||||| |||||| |||||||||    
T  9446973 agtagtgagcacacacaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgactgt 9447042  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 41411569 - 41411516
Alignment:
Q  209 aaacgcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 262  Q
    |||| ||||| |||||||||||| ||||||| ||||| ||||||||||||||||    
T  41411569 aaactcgttccaaaaagggtgtaatcaaaagcaatcccaaatatttgtgactgt 41411516  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 31320254 - 31320319
Alignment:
Q  193 agtagtaagcacatataaacgcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 258  Q
    |||||| ||| |||| |||||||||| |||||||||||  ||||||| ||||| |||||| |||||    
T  31320254 agtagtgagctcatacaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatatatgtga 31320319  T

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Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 33417416 - 33417503
Alignment:
Q  171 acaagtttcaccgaagagcacaagtagtaagcacatataaacgcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 258  Q
    |||||||||||| || |||||||||||| |||||||| |||  |||||||||||||||||| ||||||||||||||||||||||||||    
T  33417416 acaagtttcaccaaaaagcacaagtagtgagcacatacaaattcgttctaaaaagggtgtaatcaaaagtaatcctaaatatttgtga 33417503  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 33417282 - 33417366
Alignment:
Q  38 tgttcttctgaagctcagagaagtgtggacattttacaaaagttttg-ggggattatactaatggagagcatgattctagccttg 121  Q
    |||||||||| || ||||||| |||| |||||||||||| ||||||| ||||||||||||| ||  |||||||| ||||||||||    
T  33417282 tgttcttctgcagatcagagatgtgtcgacattttacaacagttttgaggggattatactattgaggagcatgagtctagccttg 33417366  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 31610042 - 31610111
Alignment:
Q  193 agtagtaagcacatataaacgcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 262  Q
    |||||| |||||||| ||||||||||||||||||||||  ||||||| ||||| |||||| || ||||||    
T  31610042 agtagtgagcacatacaaacgcgttctaaaaagggtgtgatcaaaagcaatcccaaatatatgcgactgt 31610111  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 207
Target Start/End: Complemental strand, 15867420 - 15867381
Alignment:
Q  168 tagacaagtttcaccgaagagcacaagtagtaagcacata 207  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  15867420 tagacaagtttcaccaaaaagcacaagtagtaagcacata 15867381  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 40 - 127
Target Start/End: Original strand, 40715799 - 40715887
Alignment:
Q  40 ttcttctgaagctcagagaagtgtggacattttacaaaagtttt-gggggattatactaatggagagcatgattctagccttgtctgtc 127  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||  |||||||| ||||||||||| ||||    
T  40715799 ttcttttgaagctcagagaagtgtggacattttacaaaagttttggggggattataccaatgaggagcatgagtctagccttgtttgtc 40715887  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 168 - 258
Target Start/End: Original strand, 6596498 - 6596588
Alignment:
Q  168 tagacaagtttcaccgaagagcacaagtagtaagcacatataaacgcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 258  Q
    |||||||||||||||||| |||| ||||||| |||||||  |||| | |||||||||||||||| ||||||| ||||||||||||||||||    
T  6596498 tagacaagtttcaccgaaaagcataagtagtgagcacatccaaactcattctaaaaagggtgtaatcaaaagcaatcctaaatatttgtga 6596588  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 6596378 - 6596452
Alignment:
Q  49 agctcagagaagtgtggacattttacaaaagttttggggga-ttatactaatggagagcatgattctagccttgt 122  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||  || ||  |||||||| |||||||||||    
T  6596378 agctcagagaagtgtggatattttacaaaagttttgggggagttatcatactgaggagcatgaatctagccttgt 6596452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 2048818 - 2048920
Alignment:
Q  20 gtgcatgctgcaaatgtttgttcttctgaagctcagagaagtgtggacattttacaaaagtttt-gggggattatactaatggagagcatgattctagcc 118  Q
    |||||| |||||  |||||||||||||| ||||||||||||||| |||| |||||||||||||| |||||||||||| ||||  |||||||| |||||||    
T  2048818 gtgcatactgcagttgtttgttcttctgcagctcagagaagtgtagaca-tttacaaaagttttggggggattataccaatgaggagcatgagtctagcc 2048916  T
Q  119 ttgt 122  Q
    ||||    
T  2048917 ttgt 2048920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 39735815 - 39735889
Alignment:
Q  188 gcacaagtagtaagcacatataaacgcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 262  Q
    ||||||||||| |||||||| |||| ||||| || ||||||||| ||||||| ||||| |||||| |||||||||    
T  39735815 gcacaagtagtgagcacatacaaactcgttccaagaagggtgtaatcaaaagcaatccaaaatatatgtgactgt 39735889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 253
Target Start/End: Original strand, 2048966 - 2049051
Alignment:
Q  168 tagacaagtttcaccgaagagcacaagtagtaagcacatataaacgcgttctaaaaagggtgtagtcaaaagtaatcctaaatatt 253  Q
    ||||||||||||| | || |||||||||||| |||| ||| |||| ||||| |||||||||||  ||||||| ||||| |||||||    
T  2048966 tagacaagtttcatcaaaaagcacaagtagtgagcatatacaaactcgttccaaaaagggtgttatcaaaagcaatcccaaatatt 2049051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 3959014 - 3958945
Alignment:
Q  187 agcacaagtagtaagcacatataaacgcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 256  Q
    ||||||| |||| |||||||| |||| |||||||||||||||||  ||||||| ||||| ||||||||||    
T  3959014 agcacaaatagtgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaatcccaaatatttgt 3958945  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 321 - 433
Target Start/End: Original strand, 4292984 - 4293093
Alignment:
Q  321 tttcttttatcagagacattttggtctccatttttagattctctcattaatactgtaatagggtgcagacccactcctgcc--gattttaatgcatttct 418  Q
    ||||||| |||| ||||||||||||||||||||||||| |||||||||     ||||||||||||||| ||||||||||||    ||||||||||||| |    
T  4292984 tttctttaatcaaagacattttggtctccatttttagactctctcatt-----tgtaatagggtgcaggcccactcctgccttttttttaatgcattttt 4293078  T
Q  419 tagcctttatcaaaa 433  Q
    |||||||||| ||||    
T  4293079 tagcctttataaaaa 4293093  T

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Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 168 - 258
Target Start/End: Complemental strand, 8308298 - 8308208
Alignment:
Q  168 tagacaagtttcaccgaagagcacaagtagtaagcacatataaacgcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 258  Q
    |||||||||||||| ||| || ||||||||| |||||||| |||| ||||||||||||  |||| ||||||||||||| ||||||||||||    
T  8308298 tagacaagtttcactgaaaagtacaagtagtgagcacatacaaactcgttctaaaaagaatgtaatcaaaagtaatcccaaatatttgtga 8308208  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 38835974 - 38836075
Alignment:
Q  20 gtgcatgctgcaaatgtttgttcttctgaagctcagagaagtgtggacattttacaaaagttttgggg-gattatactaatggagagcatgattctagcc 118  Q
    |||||| |||||  |||||||||||||| ||||||||  ||||| ||||||||||||||||||||||| |||||||| ||||  |||||||| |||||||    
T  38835974 gtgcatactgcagttgtttgttcttctgcagctcaga--agtgtagacattttacaaaagttttggggcgattataccaatgaggagcatgagtctagcc 38836071  T
Q  119 ttgt 122  Q
    ||||    
T  38836072 ttgt 38836075  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 253
Target Start/End: Original strand, 38836121 - 38836206
Alignment:
Q  168 tagacaagtttcaccgaagagcacaagtagtaagcacatataaacgcgttctaaaaagggtgtagtcaaaagtaatcctaaatatt 253  Q
    ||||||||||||||| || |||||||||||| |||| ||| |||| ||||| ||||| |||||  ||||||| ||||| |||||||    
T  38836121 tagacaagtttcaccaaaaagcacaagtagtgagcatatacaaactcgttccaaaaatggtgttatcaaaagcaatcccaaatatt 38836206  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 49094614 - 49094543
Alignment:
Q  187 agcacaagtagtaagcacatataaacgcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 258  Q
    |||||||||||| |||||||| |||| ||||| ||||| |||||  ||||||| ||||| ||||||||||||    
T  49094614 agcacaagtagtgagcacatacaaacacgttccaaaaaaggtgttatcaaaagcaatcccaaatatttgtga 49094543  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 30559431 - 30559359
Alignment:
Q  187 agcacaagtagtaagcacatataaacgcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgac 259  Q
    ||||||||| || |||||||| ||||  |||| |||||||||||  ||||||| ||||| ||| |||||||||    
T  30559431 agcacaagtcgtgagcacatagaaacttgttccaaaaagggtgttatcaaaagcaatcccaaagatttgtgac 30559359  T

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Target: scaffold0098 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 21848 - 21800
Alignment:
Q  40 ttcttctgaagctcagagaagtgtggacattttacaaaagttttggggg 88  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||    
T  21848 ttcttctgcagctcagaaaagtgtggacattttacaaaagttttggggg 21800  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 17937621 - 17937709
Alignment:
Q  40 ttcttctgaagctcagagaagtgtggacattttac-aaaagttttgggg-gattatactaatggagagcatgattctagccttgtctgt 126  Q
    |||||||| ||||||||||||||| |||||||||| ||||||||||||| ||||| |||| ||  || ||||| |||| ||||||||||    
T  17937621 ttcttctgcagctcagagaagtgttgacattttacaaaaagttttggggtgattacactactgaggaacatgaatctaaccttgtctgt 17937709  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 42080758 - 42080685
Alignment:
Q  189 cacaagtagtaagcacatataaacgcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 262  Q
    |||||||||| |||||||  |||| ||||| |||||||||||| ||||||| ||||| |||||| | |||||||    
T  42080758 cacaagtagtgagcacatccaaactcgttccaaaaagggtgtaatcaaaagcaatcccaaatatgtttgactgt 42080685  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 17867409 - 17867361
Alignment:
Q  40 ttcttctgaagctcagagaagtgtggacattttacaaaagttttggggg 88  Q
    |||||||  |||| ||||||||||||||||||||||||| |||||||||    
T  17867409 ttcttctacagcttagagaagtgtggacattttacaaaatttttggggg 17867361  T

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Target: scaffold0141 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 16599 - 16533
Alignment:
Q  190 acaagtagtaagcacatataaacgcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 256  Q
    ||||| ||| ||||||||||||| ||||| || ||||||||  ||||||| ||||| ||||||||||    
T  16599 acaaggagtgagcacatataaactcgttccaagaagggtgtgatcaaaagcaatccaaaatatttgt 16533  T

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