View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19855_low_5 (Length: 419)
Name: NF19855_low_5
Description: NF19855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19855_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 16 - 404
Target Start/End: Original strand, 17357028 - 17357416
Alignment:
| Q |
16 |
accttcatcatcatcatcttcaatgagatcattatcaacagcaggtagtcctgaatactcatctctcatattcaacattccacctggaacttctccacct |
115 |
Q |
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| T |
17357028 |
accttcatcatcttcatcttcaatgagatcattatcaacagcaggtagtcctgaatactcatctctcatattcaacattccacctggaacttctccacct |
17357127 |
T |
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| Q |
116 |
caattttcacctgatcttacccaacttggaggagtaaatattccaccaatgagacctgtttcaaacacactactacctcttcaacttcaacaattgcctc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17357128 |
caattttcacctgatcttacccaacttggaggagtaaatattccaccaatgagacctgtttcaaacacactactacctcttcaacttcaacaattacctc |
17357227 |
T |
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| Q |
216 |
aaatcacaccaacacaattatactctacaacacaaattgagaatgatgtaataatgagagctatccaaaatgttctatctacacccccttctcatcaaca |
315 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17357228 |
aaatcacaccaacacaattataccctacaacacaaattgagaatgatgtaataatgagagcaatccaaaatgttctatctacacccccttctcatcaaca |
17357327 |
T |
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| Q |
316 |
tcaacctcagcaaaattatgtggcacatccagaagctagtgcatttggaaggtatagacatgataaaagtcctaatatagggtcaaatt |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17357328 |
tcaacctcagcaaaattatgtggcacatccagaagctagtgcatttggaaggtatagacatgataaaagtcctaatatagggtcaaatt |
17357416 |
T |
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