View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19855_low_8 (Length: 400)
Name: NF19855_low_8
Description: NF19855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19855_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 380
Target Start/End: Original strand, 43295126 - 43295493
Alignment:
| Q |
13 |
aatataaaccataaaaatgacttttatgatattgcaaggaagttgaaataatatttcttttgtnnnnnnnctcaaagaacaagatttttcaaatgaagta |
112 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43295126 |
aatataaaccataaaaatgacttttaagatactgcaaggaagttgaaataatatttcttttgtaaaaaaactcaaagaacaagatttttcaaatgaagta |
43295225 |
T |
|
| Q |
113 |
ttctcgtttaatcttgcacgaagatttcaatgcttttcgacatttcttgagaattgacgctccttactctctccaagttaccttctttctcaatccaaat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43295226 |
ttctcgtttaatcttgcacgaagatttcgatgcttttcgacatttcttgagaattgacgctccttgttctctccaagttaccttctttctcaatccaaat |
43295325 |
T |
|
| Q |
213 |
atattgtcggttgtcatccttaatcatatactcgtctctctaacacaacaaatagtcctctcgagcataatgttcaacacaggtcccctgatggtgtcgc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43295326 |
atattgtcggttgtcatccttaatcatatactcgtctctctaatacaacaaatagtcctctcgagcataatgttcaacacacgtcccctgatggtgtcgc |
43295425 |
T |
|
| Q |
313 |
tctcctagatctcacgaggtatcgaacaatagttaattgtgttgcctactacattatgttgggaagtt |
380 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43295426 |
tcacctagatctcacgaggtatggaacaatagttaattgtgttgcctactacattatgttgggaagtt |
43295493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 22435684 - 22435654
Alignment:
| Q |
13 |
aatataaaccataaaaatgacttttatgata |
43 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
22435684 |
aatataaaccataaaaatgacttttatgata |
22435654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University