View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19855_low_9 (Length: 376)

Name: NF19855_low_9
Description: NF19855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19855_low_9
NF19855_low_9
[»] chr7 (6 HSPs)
chr7 (14-312)||(38176193-38176490)
chr7 (39-312)||(42415154-42415426)
chr7 (131-181)||(10486572-10486621)
chr7 (147-312)||(8177980-8178144)
chr7 (134-263)||(38195567-38195695)
chr7 (41-198)||(41192416-41192572)
[»] chr3 (6 HSPs)
chr3 (14-312)||(1527131-1527428)
chr3 (117-312)||(48798988-48799180)
chr3 (39-312)||(53920179-53920454)
chr3 (147-296)||(25500951-25501099)
chr3 (147-263)||(1930111-1930226)
chr3 (225-312)||(50509460-50509547)
[»] chr2 (7 HSPs)
chr2 (14-312)||(4318673-4318969)
chr2 (14-312)||(6409460-6409757)
chr2 (15-312)||(28626307-28626603)
chr2 (41-312)||(34212661-34212931)
chr2 (147-312)||(31015396-31015560)
chr2 (42-142)||(18977308-18977408)
chr2 (149-263)||(35581408-35581520)
[»] chr5 (4 HSPs)
chr5 (41-312)||(22497596-22497866)
chr5 (147-263)||(12186853-12186968)
chr5 (209-289)||(41732460-41732540)
chr5 (128-185)||(9178875-9178931)
[»] chr8 (7 HSPs)
chr8 (22-268)||(8618314-8618559)
chr8 (311-366)||(31825894-31825949)
chr8 (136-260)||(31385782-31385905)
chr8 (207-263)||(3664954-3665010)
chr8 (140-198)||(2704027-2704084)
chr8 (317-355)||(34383553-34383591)
chr8 (147-286)||(15074323-15074461)
[»] chr6 (2 HSPs)
chr6 (169-312)||(28909650-28909796)
chr6 (134-263)||(1100973-1101101)
[»] chr1 (5 HSPs)
chr1 (41-297)||(46342859-46343114)
chr1 (22-312)||(44585683-44585972)
chr1 (134-263)||(4816695-4816823)
chr1 (125-216)||(19023315-19023405)
chr1 (131-312)||(5299419-5299599)
[»] chr4 (1 HSPs)
chr4 (125-263)||(29542182-29542319)
[»] scaffold0094 (1 HSPs)
scaffold0094 (147-301)||(15223-15376)


Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 14 - 312
Target Start/End: Complemental strand, 38176490 - 38176193
Alignment:
Q  14 cagttagaattatcaaatgtgcaattagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38176490 cagttagaattatcaaatgtgcaattagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatca 38176391  T
Q  114 ttgatgactgcaggtcactattacaacaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38176390 ttgatgactgcaggtcactattacaacaatttacaaactttaaga-taagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgt 38176292  T
Q  214 caatatttcaagctcgtcaccaagtctttgatttgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38176291 caatatttcaagctcgtcaccaagtctttgatttgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa 38176193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 39 - 312
Target Start/End: Original strand, 42415154 - 42415426
Alignment:
Q  39 tagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcattgatgactgcaggtcactattaca 138  Q
    ||||||||||||| ||||||||||| |||||||| | ||||| ||||| ||| || || || ||||||||||||||    || ||  |||| |  ||| |    
T  42415154 tagaactagattgcaaactagtggttgatagcatttttgataggaatagcaatcaagcggagtttggtagtatcatatccgaatgtcggtcgcgtttaaa 42415253  T
Q  139 acaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagt 238  Q
    ||| | | ||||||||| || |||||||||||||||||||||| ||| ||||||||||||  || ||||||| ||| | |||  | ||||||||||| |     
T  42415254 acattatccaaactttagga-taagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccagga 42415352  T
Q  239 ctttgatttgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa 312  Q
     ||||||||||||||||| | ||||  || |  |||||  |||||||| ||||||||||||||| |||||||||    
T  42415353 gtttgatttgattccatcatatattgaaactattgtgagaaatgaaataatatgagtttttgtttgtcaaaaaa 42415426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 10486621 - 10486572
Alignment:
Q  131 ctattacaacaatttacaaactttaagaataagttttgttaggagacaagc 181  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  10486621 ctattacaacaattttcaaactttaag-ataagttttgttaggagacaagc 10486572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 312
Target Start/End: Complemental strand, 8178144 - 8177980
Alignment:
Q  147 caaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatt 246  Q
    |||||||||||| ||||||||| |||||||||||| ||| |||| || ||||  || ||||||| ||||| |||  | ||| ||| ||| || |||||||    
T  8178144 caaactttaaga-taagttttgctaggagacaagcaaattttgttgcccatacattagctagggagtcaaaattgtatgctagtcgccacgtttttgatt 8178046  T
Q  247 tgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa 312  Q
     |||||||||||||||| | | |  | | ||||| ||||  |||| ||||| ||||||||||||||    
T  8178045 ggattccatcttgtattacgactactattatgaacgaaagaatataagtttctgttggtcaaaaaa 8177980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 263
Target Start/End: Complemental strand, 38195695 - 38195567
Alignment:
Q  134 ttacaacaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcac 233  Q
    |||||||| ||| |||||||||||| |||||||  |  |||||||||| |||  ||||||||||||||| ||| ||| | |||  || || ||| |||||    
T  38195695 ttacaacactttccaaactttaaga-taagtttcatctggagacaagcaaattatgtcgctcatagtttagctcgggcgacaaagttgcatgctagtcac 38195597  T
Q  234 caagtctttgatttgattccatcttgtatt 263  Q
    ||||| ||  ||||||||||||||||||||    
T  38195596 caagtgttcaatttgattccatcttgtatt 38195567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 41192416 - 41192572
Alignment:
Q  41 gaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcattgatgactgcaggtcactattacaac 140  Q
    ||||||||||||||||| ||| | || |||||||||||||||||| | || || || ||| |||  | |||||| | ||  || | |||||| |||||||    
T  41192416 gaactagattgtaaacttgtgattgagagcatatatgataagaatgataatcaagccgaacttgccaatatcatagttggttgtacgtcacttttacaac 41192515  T
Q  141 aatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcata 198  Q
    |||  |||||||||||| || | |||||| ||||||||| | |||||||||| |||||    
T  41192516 aatccacaaactttaag-atgaattttgtcaggagacaaacaaatgttgtcggtcata 41192572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 14 - 312
Target Start/End: Original strand, 1527131 - 1527428
Alignment:
Q  14 cagttagaattatcaaatgtgcaattagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1527131 cagttagaattatcaaatgtgcaattagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatca 1527230  T
Q  114 ttgatgactgcaggtcactattacaacaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1527231 ttgatgactgcaggtcactattacaacaatttacaaactttaag-ataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgt 1527329  T
Q  214 caatatttcaagctcgtcaccaagtctttgatttgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||    
T  1527330 caatatttcaagctcgtcaccaagtctttgatttgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagttttttgttgtcaaaaaa 1527428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 117 - 312
Target Start/End: Complemental strand, 48799180 - 48798988
Alignment:
Q  117 atgactgcaggtcactattacaacaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaa 216  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||  |||||||||||||||||||| ||||||||| |||||||||||    
T  48799180 atgactgcaagtcactattacaacaatttacaaactttaagaa-aagtttcgttagatgacaagcgaatgttgtcgcttatagtttcgttagggtgtcaa 48799082  T
Q  217 tatttcaagctcgtcaccaagtctttgatttgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa 312  Q
    |||| |||| | ||| |||| ||| |||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||| ||||||    
T  48799081 tattacaagttggtcgccaaatctatgatttgattccatcttgtatttcaaattgtgtgatgaatgaaatg--atgagtttttgttggtaaaaaaa 48798988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 39 - 312
Target Start/End: Original strand, 53920179 - 53920454
Alignment:
Q  39 tagaactagattgtaaactagtggtggatagcatatatgataagaataacaac---caggcagaatttggtagtatcattgatgactgcaggtcactatt 135  Q
    ||||||| ||||| ||||||||| | |||||||| | ||||| ||||| || |   || || || ||||||||| ||||   ||| ||| |||| || ||    
T  53920179 tagaactggattgcaaactagtgtttgatagcatttttgataggaatagcagcaatcaagcggagtttggtagtctcatatctgaatgccggtcgctttt 53920278  T
Q  136 acaacaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcacca 235  Q
    | |||| | | |||||||||||| | ||||||||||| |||||||| ||| ||||||||||||  || ||||||| ||| | |||  | |||||||||||    
T  53920279 aaaacattatccaaactttaaga-tgagttttgttagaagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcacca 53920377  T
Q  236 agtctttgatttgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa 312  Q
    ||  |||| |||||||||||||||||||  || |  |||||  |||||||| | ||||||||||||| |||||||||    
T  53920378 agagtttgttttgattccatcttgtattgaaactattgtgagaaatgaaataacatgagtttttgtttgtcaaaaaa 53920454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 147 - 296
Target Start/End: Original strand, 25500951 - 25501099
Alignment:
Q  147 caaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatt 246  Q
    |||||||||||| ||| || ||| ||||||||||| |||  |||||| |||||||| || ||||  |||| |||  | |||||||||| ||||||| |||    
T  25500951 caaactttaaga-taaattatgtaaggagacaagcaaattgtgtcgcccatagtttagcaagggcatcaaaattgtatgctcgtcaccgagtctttcatt 25501049  T
Q  247 tgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtt 296  Q
    |||||||||||||||||  || |  ||||||||||||||| |||| ||||    
T  25501050 tgattccatcttgtattgaaactattgtgatgaatgaaataatataagtt 25501099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 147 - 263
Target Start/End: Original strand, 1930111 - 1930226
Alignment:
Q  147 caaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatt 246  Q
    |||||||||| ||||||||||| ||||||| | || |||  |||| |||||| ||| ||  ||| ||||| ||| || ||||||||||||   |||||||    
T  1930111 caaactttaa-aataagttttgctaggagaaatgctaattatgtcactcatactttagcaggggcgtcaagattacatgctcgtcaccaacagtttgatt 1930209  T
Q  247 tgattccatcttgtatt 263  Q
    |||||||||||||||||    
T  1930210 tgattccatcttgtatt 1930226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 50509547 - 50509460
Alignment:
Q  225 gctcgtcaccaagtctttgatttgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa 312  Q
    |||||||||||  |||||||||||||||||||||||||| |   |  ||||||||||||||| |||| |||| || ||||| ||||||    
T  50509547 gctcgtcaccacatctttgatttgattccatcttgtattacctctattgtgatgaatgaaataatataagttatttttggtaaaaaaa 50509460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 14 - 312
Target Start/End: Complemental strand, 4318969 - 4318673
Alignment:
Q  14 cagttagaattatcaaatgtgcaattagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatca 113  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4318969 cagttaaaattatcaaatgtgcaattagaactagattgtaaactagtgttg-atagcatatatgataagaataacaaccaggcagaatttggtagtatca 4318871  T
Q  114 ttgatgactgcaggtcactattacaacaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgt 213  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  4318870 ttgatgactgcaggtcactattacaaaaatttacaaactttaaga-taagttttgttaggagacaagtaaatgttgtcgctcatagtttcgctagggtgt 4318772  T
Q  214 caatatttcaagctcgtcaccaagtctttgatttgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa 312  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4318771 caatattacaagctcgtcaccaagtctttgatttgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa 4318673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 312
Target Start/End: Original strand, 6409460 - 6409757
Alignment:
Q  14 cagttagaattatcaaatgtgcaattagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatca 113  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  6409460 cagttagaattatcaaatgtgaaaatagaactagattgtaaactagtggttgatagtatatatgataagaataacaaccaggtagaatttggtagtatca 6409559  T
Q  114 ttgatgactgcaggtcactattacaacaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgt 213  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| ||||||||| |||||||||||| ||||    
T  6409560 ttgatgactgcaggtcactattacaacaatttacaaattttaaga-taagttttgttaggagagaagcgaatattgtcgctcgtagtttcgctagagtgt 6409658  T
Q  214 caatatttcaagctcgtcaccaagtctttgatttgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa 312  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6409659 caatattacaagctcgtcaccaagtctttaatttgattccatcttaaattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa 6409757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 312
Target Start/End: Complemental strand, 28626603 - 28626307
Alignment:
Q  15 agttagaattatcaaatgtgcaattagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcat 114  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  28626603 agttagaattatcaaatgtgctaatagaactagattgtaaactagtggttgatagcatatatgataagaataactaccaggaagaatttggtagtatcat 28626504  T
Q  115 tgatgactgcaggtcactattacaacaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtc 214  Q
      |||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28626503 caatgactgcaggtaactattacaacaatgtacaaactttaaga-taagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctaaggtgtc 28626405  T
Q  215 aatatttcaagctcgtcaccaagtctttgatttgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa 312  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  28626404 aatattacaagctcgtcaccaagtctttgatttgattccattttgtattccaaattgtgtgatgaatgaaatggtatgagtttttgttggtaaaaaaa 28626307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 41 - 312
Target Start/End: Original strand, 34212661 - 34212931
Alignment:
Q  41 gaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcattgatgactgcaggtcactattacaac 140  Q
    |||||||||||||| |||||||| |||||||||| |||||||||||| |||||  | |||||||| | |||||| | ||| || | |||||| |||||||    
T  34212661 gaactagattgtaagctagtggttgatagcatatgtgataagaataataaccaaaccgaatttggcaatatcatagctgattgtatgtcacttttacaac 34212760  T
Q  141 aatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtct 240  Q
    |||| ||||||||||||| ||| ||||||||||||||||||||||||||||||| |||| || || || ||||||||||| || | || |||||| ||||    
T  34212761 aattcacaaactttaaga-taaattttgttaggagacaagcgaatgttgtcgcttatagcttagcaagagtgtcaatattacatgttcctcaccatgtct 34212859  T
Q  241 ttgatttgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa 312  Q
    |||||||||||||||||| |||| ||||   || |||||||||||| |||||||||| || | |||||||||    
T  34212860 ttgatttgattccatcttatattacaaaccttgcgatgaatgaaataatatgagtttatggttgtcaaaaaa 34212931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 147 - 312
Target Start/End: Complemental strand, 31015560 - 31015396
Alignment:
Q  147 caaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatt 246  Q
    |||||||||||| ||| |||||||||||| ||||| ||| ||||| | ||||| || || | |||||||  | | || |||||||||||||| |||||||    
T  31015560 caaactttaaga-taaattttgttaggaggcaagcaaattttgtcacccatagcttagcaaaggtgtcacgaatgcatgctcgtcaccaagtgtttgatt 31015462  T
Q  247 tgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa 312  Q
    |||||||||||||||||    ||  |||||  |||||||| ||||||||||||||| || ||||||    
T  31015461 tgattccatcttgtattgactatattgtgagaaatgaaataatatgagtttttgtttgtaaaaaaa 31015396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 142
Target Start/End: Complemental strand, 18977408 - 18977308
Alignment:
Q  42 aactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcattgatgactgcaggtcactattacaaca 141  Q
    ||||||||||||| |||||||| |||||||||| |||||||||||| ||||| || |||||||| | |||||  | |||||| | |||||| ||||||||    
T  18977408 aactagattgtaagctagtggttgatagcatatgtgataagaataataaccaagccgaatttggcaatatcaaagctgactgtatgtcacttttacaaca 18977309  T
Q  142 a 142  Q
    |    
T  18977308 a 18977308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 35581520 - 35581408
Alignment:
Q  149 aactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatttg 248  Q
    |||||||||| ||||||||||||| |||||| | ||| |||||||||||| | | || |||||||||| |||  |  || ||||| || | |||||||||    
T  35581520 aactttaaga-taagttttgttagaagacaaactaatattgtcgctcatactct-gcaagggtgtcaagattgtatcctagtcactaaatttttgatttg 35581423  T
Q  249 attccatcttgtatt 263  Q
    |||||||||| ||||    
T  35581422 attccatcttatatt 35581408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 41 - 312
Target Start/End: Complemental strand, 22497866 - 22497596
Alignment:
Q  41 gaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcattgatgactgcaggtcactattacaac 140  Q
    ||||||||||||||  ||||||| |||||||||| |||||||||||| ||||| || |||||||| | |||||| | | | || | |||||| || ||||    
T  22497866 gaactagattgtaagatagtggttgatagcatatgtgataagaataataaccaagccgaatttggcaatatcatagctaattgtatgtcacttttgcaac 22497767  T
Q  141 aatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtct 240  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||  || || |||||||||||||| || ||||||||||  ||||    
T  22497766 aattcacaaactttaaga-taagttttgttaggagacaagcgaatgttgtcactcataacttagcaagggtgtcaatattacatgctcgtcaccgtgtct 22497668  T
Q  241 ttgatttgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa 312  Q
    ||||||||||||| ||||||||| ||||   || |||||||||||| |||||||||| |||| |||||||||    
T  22497667 ttgatttgattccttcttgtattacaaaccttgcgatgaatgaaataatatgagtttatgtttgtcaaaaaa 22497596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 263
Target Start/End: Original strand, 12186853 - 12186968
Alignment:
Q  147 caaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatt 246  Q
    |||||||||||| |||||||||||||||| |||||||||   ||||| ||||| || || | |||||||    | || |||||||||||||| |||||||    
T  12186853 caaactttaaga-taagttttgttaggaggcaagcgaattccgtcgcccatagcttagcaaaggtgtcacggatgcatgctcgtcaccaagtgtttgatt 12186951  T
Q  247 tgattccatcttgtatt 263  Q
    |||||||||||||||||    
T  12186952 tgattccatcttgtatt 12186968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 289
Target Start/End: Original strand, 41732460 - 41732540
Alignment:
Q  209 ggtgtcaatatttcaagctcgtcaccaagtctttgatttgattccatcttgtattccaaattgtgtgatgaatgaaatgat 289  Q
    |||||||| ||| || |||||||| ||||| |||||||||||| ||||||||||| ||||   |  |||||||||||||||    
T  41732460 ggtgtcaagattgcatgctcgtcatcaagtttttgatttgatttcatcttgtattacaaacattacgatgaatgaaatgat 41732540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 9178931 - 9178875
Alignment:
Q  128 tcactattacaacaatttacaaactttaagaataagttttgttaggagacaagcgaat 185  Q
    ||||| |||||| |||||  ||||||||| |||||||||||||| |||||||||||||    
T  9178931 tcacttttacaataatttttaaactttaa-aataagttttgttaagagacaagcgaat 9178875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 22 - 268
Target Start/End: Complemental strand, 8618559 - 8618314
Alignment:
Q  22 attatcaaatgtgcaattagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcattgatgac 121  Q
    ||||||| |||||||  | |||||||||||||| |||||||| |||||||||| |||||||||||| ||||| ||  ||||||| | |||||| | |||     
T  8618559 attatcagatgtgcacatcgaactagattgtaagctagtggttgatagcatatgtgataagaataataaccaagccaaatttggcaatatcatagctgat 8618460  T
Q  122 tgcaggtcactattacaacaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatattt 221  Q
    || |||||||| ||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||     
T  8618459 tgtaggtcacttttacaacaattcacaaacttcaaga-taagttttgttaggagacaagcgaatgttgtcgctcatagcttagcaagggtgtcaatatta 8618361  T
Q  222 caagctcgtcaccaagtctttgatttgattccatcttgtattccaaa 268  Q
    ||  ||||||||||  |||| ||||||||||||||||||||| ||||    
T  8618360 catcctcgtcaccatttcttcgatttgattccatcttgtattacaaa 8618314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 311 - 366
Target Start/End: Original strand, 31825894 - 31825949
Alignment:
Q  311 aaggactaattgtttcctcttattttcaggcttggcaggtcttgtatctacctatg 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31825894 aaggactaattgtttcctcttattttcaggcttggcaggtcttgtatctacttatg 31825949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 136 - 260
Target Start/End: Complemental strand, 31385905 - 31385782
Alignment:
Q  136 acaacaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcacca 235  Q
    |||||||  |||||||||||||| |||||||||||||||||||||| ||| ||||| |||||| ||| || |||||||||| ||| || ||| |||| ||    
T  31385905 acaacaaaatacaaactttaagattaagttttgttaggagacaagctaattttgtcactcatactttagc-agggtgtcaaaattacatgcttgtcatca 31385807  T
Q  236 agtctttgatttgattccatcttgt 260  Q
    |   ||||||||||||| |||||||    
T  31385806 acagtttgatttgattctatcttgt 31385782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 3664954 - 3665010
Alignment:
Q  207 agggtgtcaatatttcaagctcgtcaccaagtctttgatttgattccatcttgtatt 263  Q
    |||||||||| ||| || |||||||||||||||||||||||| |||||| |||||||    
T  3664954 agggtgtcaaaattacacgctcgtcaccaagtctttgatttgtttccattttgtatt 3665010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 2704084 - 2704027
Alignment:
Q  140 caatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcata 198  Q
    ||||||| ||||||||||| |||||||||||||||||||||| |||  |||||||||||    
T  2704084 caatttagaaactttaaga-taagttttgttaggagacaagcaaattatgtcgctcata 2704027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 34383553 - 34383591
Alignment:
Q  317 taattgtttcctcttattttcaggcttggcaggtcttgt 355  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  34383553 taattgtttcctcttattttcaggcttggcgggtcttgt 34383591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 286
Target Start/End: Complemental strand, 15074461 - 15074323
Alignment:
Q  147 caaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatt 246  Q
    |||||||||||| ||||||||||||| |||||||| |||  ||||||||||||| | || |||   |||| |||  | |||||||| ||  |||||||||    
T  15074461 caaactttaaga-taagttttgttagaagacaagcaaattgtgtcgctcatagtatagcaaggacatcaaaattgtatgctcgtcaacatatctttgatt 15074363  T
Q  247 tgattccatcttgtattccaaattgtgtgatgaatgaaat 286  Q
    |||||| || || |||| | | |  |||||||||||||||    
T  15074362 tgattctattttatatttctactattgtgatgaatgaaat 15074323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 169 - 312
Target Start/End: Complemental strand, 28909796 - 28909650
Alignment:
Q  169 ttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatttgattccatcttgtattccaaa 268  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  28909796 ttaggagacaagcgaatgttgtcactcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttgattccatcttgcattccaaa 28909697  T
Q  269 ttgtgtgatgaatgaaa---tgatatgagtttttgttggtcaaaaaa 312  Q
    |||||||||||||||||   |||||||||||||||||||| ||||||    
T  28909696 ttgtgtgatgaatgaaatgatgatatgagtttttgttggtaaaaaaa 28909650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 134 - 263
Target Start/End: Complemental strand, 1101101 - 1100973
Alignment:
Q  134 ttacaacaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcac 233  Q
    |||||||||  | ||||||||||||| |||||||| |||||||||| | ||| |||||||||||| ||| |   ||| ||||| ||| || |||||||||    
T  1101101 ttacaacaacatccaaactttaagaa-aagttttgctaggagacaatcaaattttgtcgctcatactttagtaggggagtcaagattacatgctcgtcac 1101003  T
Q  234 caagtctttgatttgattccatcttgtatt 263  Q
    |||   ||||||||||||||||||||||||    
T  1101002 caacagtttgatttgattccatcttgtatt 1100973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 9e-55; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 41 - 297
Target Start/End: Original strand, 46342859 - 46343114
Alignment:
Q  41 gaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcattgatgactgcaggtcactattacaac 140  Q
    |||||||||||||||| |||||| |||||||||| |||||||||||| ||||| || |||||||  | |||||| | ||| || |||||||| |||||||    
T  46342859 gaactagattgtaaacaagtggttgatagcatatgtgataagaataataaccaagccgaatttgacaatatcatagttgattgtaggtcacttttacaac 46342958  T
Q  141 aatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtct 240  Q
    |||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||  || || ||| |||||||||| || | | |||||||  |||    
T  46342959 aattcacaaactctaaga-taagttttgttaggagacaagcgaatgttgtcgctcatatcttagcaaggatgtcaatattacatgttggtcaccatatct 46343057  T
Q  241 ttgatttgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagttt 297  Q
    ||||||||||| ||||||||||| ||||   ||  ||||||||||| ||||||||||    
T  46343058 ttgatttgatttcatcttgtattacaaaccttgctatgaatgaaataatatgagttt 46343114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 22 - 312
Target Start/End: Complemental strand, 44585972 - 44585683
Alignment:
Q  22 attatcaaatgtgcaattagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcattgatgac 121  Q
    ||||||| |||||||  | ||||||||||||||||||||||| |||||||||| |||||||||||| ||||| || |||||||  | ||||||   |||     
T  44585972 attatcatatgtgcacattgaactagattgtaaactagtggttgatagcatatgtgataagaataataaccaagctgaatttgacaatatcatacttgat 44585873  T
Q  122 tgcaggtcactattacaacaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatattt 221  Q
    || |||||||| ||| ||| ||| |||||||||||| ||||||||||| ||||||||  ||||||||||||||||||| || || |||||||  || ||     
T  44585872 tgtaggtcacttttataactattcacaaactttaag-ataagttttgtcaggagacagacgaatgttgtcgctcatagcttagcaagggtgttgatgtta 44585774  T
Q  222 caagctcgtcaccaagtctttgatttgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa 312  Q
    || | | |||||||||| |||||||| |||||||| |||||| |||||  || |||||||||||| ||| |||||| |||| |||||||||    
T  44585773 catgtttgtcaccaagtttttgatttaattccatcatgtattacaaatcttgcgatgaatgaaataatacgagtttatgtttgtcaaaaaa 44585683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 134 - 263
Target Start/End: Original strand, 4816695 - 4816823
Alignment:
Q  134 ttacaacaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcac 233  Q
    |||||||| ||| |||||||||||| ||| || ||| ||||||||||| |||  |||||| ||||| || || |||| ||||| |||  | |||||||||    
T  4816695 ttacaacattttccaaactttaaga-taaattatgtaaggagacaagcaaattatgtcgcccatagcttagcaagggagtcaaaattgtatgctcgtcac 4816793  T
Q  234 caagtctttgatttgattccatcttgtatt 263  Q
    |||||||||||||||||| |||||| ||||    
T  4816794 caagtctttgatttgatttcatcttatatt 4816823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 216
Target Start/End: Complemental strand, 19023405 - 19023315
Alignment:
Q  125 aggtcactattacaacaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaa 216  Q
    ||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||| | |||  | || ||||||| || ||||||| |||||    
T  19023405 aggtctctattacaacaattttcaaactttaag-ataagttttgttaggagacaaacaaattatatcactcatagcttagctagggagtcaa 19023315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 312
Target Start/End: Original strand, 5299419 - 5299599
Alignment:
Q  131 ctattacaacaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgt 230  Q
    |||| |||||||||| ||||||||||| |||| ||||||||| ||||||||||||   ||||| ||| | || || |||| | ||| |||    ||||||    
T  5299419 ctataacaacaatttccaaactttaag-ataaattttgttagaagacaagcgaattcggtcgcccattgcttagcaagggaggcaaaattgtgtgctcgt 5299517  T
Q  231 caccaagtctttgatttgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaa 312  Q
    ||||| || ||  |||||||||||||||||||| | | |  | | | |||| |||| ||||||||||||||| || ||||||    
T  5299518 caccacgttttcaatttgattccatcttgtattgctactattttaaggaataaaataatatgagtttttgtttgtaaaaaaa 5299599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 125 - 263
Target Start/End: Original strand, 29542182 - 29542319
Alignment:
Q  125 aggtcactattacaacaatttacaaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaa 224  Q
    ||||| ||||||||||||||| |||||||||||| ||| ||||||||||| |||||| |||  |||||| ||| | || ||||||| ||||| |||  |     
T  29542182 aggtctctattacaacaattttcaaactttaaga-taaattttgttaggatacaagcaaattatgtcgcccatggcttagctagggagtcaaaattgtac 29542280  T
Q  225 gctcgtcaccaagtctttgatttgattccatcttgtatt 263  Q
    ||||||||||| || ||||||| ||||||||||||||||    
T  29542281 gctcgtcaccatgtttttgattcgattccatcttgtatt 29542319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 147 - 301
Target Start/End: Original strand, 15223 - 15376
Alignment:
Q  147 caaactttaagaataagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatt 246  Q
    |||||||||||| |||||||||||||||||||||| ||| ||||||||||||  || ||||||| ||| | |||  | |||||||||||||  |||||||    
T  15223 caaactttaaga-taagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgatt 15321  T
Q  247 tgattccatcttgtattccaaattgtgtgatgaatgaaatgatatgagtttttgt 301  Q
    | ||||||| || ||||  || |  |||||  |||||||| ||||||||||||||    
T  15322 taattccattttatattgaaactattgtgagaaatgaaataatatgagtttttgt 15376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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