View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19856_high_14 (Length: 359)
Name: NF19856_high_14
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_high_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 352
Target Start/End: Complemental strand, 33802994 - 33802658
Alignment:
| Q |
16 |
agttgtgtcaggctaattcatcattcaagagaagtagatcacctgatccattcactagaggtgaaacttctaatcaaggttcacaaattgatgaaaggtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33802994 |
agttgtgtcaggctaattcatcattcaagagaagtagatcgcctgatccattcactagaggtgaaacttctaatcaaggttcacaaattgatgaaaggtt |
33802895 |
T |
|
| Q |
116 |
tagcagaagacgcactcttcctcctccttttcatccttatcaagacaatgtcaataacatgtcttctttacctacaacaacattttgggatcatttcatc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33802894 |
tagcagaagacgcactcttcctcctccttttcatccttatcaagacaatgtcaataacatgtcttctttacctacaacaacattttgggatcatttcatc |
33802795 |
T |
|
| Q |
216 |
atggatgaagatgttgatgtagaagcaggactaagtagtactactactctgtctgaaattaatagctctcctggtggtcctgcatcatttctatatccct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33802794 |
atggatgaagatgttgatgtagaagcaggactaagtagtactactactctgtctgaaattaatagctctcctggtggtcctgcatcatttctatatccct |
33802695 |
T |
|
| Q |
316 |
ctgcagcaacaagagaaacaacaagttcttcttctca |
352 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
33802694 |
ctgcagcaacaagagaagcaacatgttcttcttctca |
33802658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 352
Target Start/End: Complemental strand, 33731615 - 33731279
Alignment:
| Q |
16 |
agttgtgtcaggctaattcatcattcaagagaagtagatcacctgatccattcactagaggtgaaacttctaatcaaggttcacaaattgatgaaaggtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33731615 |
agttgtgtcaggctaattcatcattcaagagaagtagatcgcctgatccattcactagaggggaaacttctaatcaaggttcacaaattgatgaaaggtt |
33731516 |
T |
|
| Q |
116 |
tagcagaagacgcactcttcctcctccttttcatccttatcaagacaatgtcaataacatgtcttctttacctacaacaacattttgggatcatttcatc |
215 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33731515 |
tagcagaagacacactcttcctcctccttttcatccttatcaagacaatgtcaataacatgtcttctttacctacaacaacattttgggatcatttcatc |
33731416 |
T |
|
| Q |
216 |
atggatgaagatgttgatgtagaagcaggactaagtagtactactactctgtctgaaattaatagctctcctggtggtcctgcatcatttctatatccct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33731415 |
atggatgaagatgttgatgtagaagcaggactaagtagtactactactctgtctgaaattaatagctctcctggtggtcctgcatcatttctatatccct |
33731316 |
T |
|
| Q |
316 |
ctgcagcaacaagagaaacaacaagttcttcttctca |
352 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33731315 |
ctgcagcaacaagagaagcaacaagttcttcttctca |
33731279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 27 - 286
Target Start/End: Original strand, 6145531 - 6145784
Alignment:
| Q |
27 |
gctaattcatcattcaagagaagtagatcacctgatccattcactagaggtgaaacttctaatcaaggttcacaaattgatgaaaggtttagcagaagac |
126 |
Q |
| |
|
|||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| | |||||||||| |
|
|
| T |
6145531 |
gctaattcattgttcaagaggaggagatcacctgatccattcactagaggtgaaacttctaatcaaggttcacaagttgacgaaagctcaagcagaagac |
6145630 |
T |
|
| Q |
127 |
gcactcttcctcctccttttcatccttatcaagacaatgtcaataacatgtcttctttacctacaacaacattttgggatcatttcatcatggatgaaga |
226 |
Q |
| |
|
|||| |||||||||||||||||| | |||||||||||||| ||||||||||| | || | ||||||||||||||||||| | ||| ||||||| |
|
|
| T |
6145631 |
acacttttcctcctccttttcatcttcatcaagacaatgtc---aacatgtcttcatcac---aagaaacattttgggatcatttcctgatgaatgaaga |
6145724 |
T |
|
| Q |
227 |
tgttgatgtagaagcaggactaagtagtactactactctgtctgaaattaatagctctcc |
286 |
Q |
| |
|
|| |||| || | ||||||| ||||||| |||| | || ||| |||||||||||| |||| |
|
|
| T |
6145725 |
tgatgatataaatgcaggaccaagtagtgctacaaatcggtccgaaattaatagccctcc |
6145784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 27 - 286
Target Start/End: Original strand, 6126112 - 6126368
Alignment:
| Q |
27 |
gctaattcatcattcaagagaagtagatcacctgatccattcactagaggtgaaacttctaatcaaggttcacaaattgatgaaaggtttagcagaagac |
126 |
Q |
| |
|
|||||||||| || ||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||| ||| | | |||||||| |
|
|
| T |
6126112 |
gctaattcattgttaaagagaaatagatcacccgatccattcattagaggtgaaacttctaatcaaggttcacaagttgacagaagctcaatcagaagac |
6126211 |
T |
|
| Q |
127 |
gcactcttcctcctccttttcatccttatcaagacaatgtcaataacatgtcttctttacctacaacaacattttgggatcatttcatcatggatgaaga |
226 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||| |||| |||||||||||| | ||||||||||||| | ||| | ||| ||||||| |
|
|
| T |
6126212 |
gcactcttcctcctccttttcatattcatcaagacaatgtc---aacacgtcttctttaccgcaagaaacattttgggataagttcttgatgtatgaaga |
6126308 |
T |
|
| Q |
227 |
tgttgatgtagaagcaggactaagtagtactactactctgtctgaaattaatagctctcc |
286 |
Q |
| |
|
|| |||| |||| ||||||| ||||||| ||||||||| || |||||||||||| |||| |
|
|
| T |
6126309 |
tgctgatatagatgcaggaccaagtagtgctactactcagttcgaaattaatagccctcc |
6126368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 6151966 - 6152030
Alignment:
| Q |
42 |
aagagaagtagatcacctgatccattcactagaggtgaaacttctaatcaaggttcacaaattga |
106 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
6151966 |
aagagaagtagatcacatgatccattaactagaggtgaaacttctaatcaaggtttacaagttga |
6152030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 42 - 169
Target Start/End: Original strand, 6138494 - 6138621
Alignment:
| Q |
42 |
aagagaagtagatcacctgatccattcactagaggtgaaacttctaatcaaggttcacaaattgatgaaaggtttagcagaagacgcactcttcctcctc |
141 |
Q |
| |
|
|||||||| |||||||| || |||| | |||||||||||||||| |||||||||||| ||||||| | | ||| |||||||||||||||||| || |
|
|
| T |
6138494 |
aagagaagcagatcaccaaatgcattaaatagaggtgaaacttctgctcaaggttcacagggtgatgaaggttctagtagaagacgcactcttccttctt |
6138593 |
T |
|
| Q |
142 |
cttttcatccttatcaagacaatgtcaa |
169 |
Q |
| |
|
||||||| || |||||||||| ||||| |
|
|
| T |
6138594 |
tttttcatactcatcaagacaacgtcaa |
6138621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 34283397 - 34283454
Alignment:
| Q |
295 |
ctgcatcatttctatatccctctgcagcaacaagagaaacaacaagttcttcttctca |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| | || |||||||||||||||| |
|
|
| T |
34283397 |
ctgcatcatttctatatccctctgcagcaataagaggagcagcaagttcttcttctca |
34283454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 278
Target Start/End: Complemental strand, 10343426 - 10343368
Alignment:
| Q |
220 |
atgaagatgttgatgtagaagcaggactaagtagtactactactctgtctgaaattaat |
278 |
Q |
| |
|
|||||| ||||||||||| ||||||| || ||||||||||||||||||| |||||||| |
|
|
| T |
10343426 |
atgaagttgttgatgtaggcgcaggaccaaatagtactactactctgtctcaaattaat |
10343368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University