View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19856_high_18 (Length: 345)
Name: NF19856_high_18
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 38419400 - 38419565
Alignment:
| Q |
1 |
aagaaaacagataacttgtgatgcaagtaatcatcaactaagatgaattattttgaaattaattaggtttttgagacaaagtacgccattgtctctcaaa |
100 |
Q |
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| T |
38419400 |
aagaaaacagataacttgtgatgcaagtaatcatcaactaagatgaattattttgaaattaattaggtttttgagacaaagtacgccattgtctctcaaa |
38419499 |
T |
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| Q |
101 |
tactcagatacggtgaagtatgcctgatgcaaggcgatcaagtgccttgtctcaaatactcagata |
166 |
Q |
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| T |
38419500 |
tactcagatacggtgaagtatgcctgatgcaaggcgatcaagtgccttgtctcaaatactcagata |
38419565 |
T |
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Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 163 - 269
Target Start/End: Original strand, 38420161 - 38420267
Alignment:
| Q |
163 |
gatatggtttgtctgccaaggaggatgatgaaacaatagtagattagcaaattatattttcatataggagaccgaaacaccaaaaagttacatgtcatat |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38420161 |
gatatggtttgtctgccaaggaggatgatgaaacaatagtagattagcaaattatattttcatataggagaccaaaacaccaaaaagttacatgtcatat |
38420260 |
T |
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| Q |
263 |
gttattc |
269 |
Q |
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||||||| |
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| T |
38420261 |
gttattc |
38420267 |
T |
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