View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19856_high_19 (Length: 343)
Name: NF19856_high_19
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 321
Target Start/End: Complemental strand, 52729490 - 52729194
Alignment:
| Q |
16 |
tctctgtgacagaatattccggagtcgttaacagcaagactgttgaacatggtagtgttggacgtgcactcaaaccagcttaggtctctcccaaactcca |
115 |
Q |
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| T |
52729490 |
tctctgtgacagaatattccggagtcgttaacagcaagactgctgaacatggtagtgttggacgtgcactcaaaccagcttaggtctctcccaaactcca |
52729391 |
T |
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| Q |
116 |
ttggttgcctctctaggctcaagcttttgaatgtctccggcaacctcattcatacccttcccaaaacaattgagaattgcaggttatgtaataatatatt |
215 |
Q |
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| T |
52729390 |
ttggttgcctctctaggctcaagcttttgaatgtctccggcaacctcattcatacccttcccaaaacaattgagaattgcaggttatgtaataatatatt |
52729291 |
T |
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| Q |
216 |
caccttttctcttttattttagtgttaaaattaaactattatatttgcactcatttttctgtcatcacctctagcttgtaaacaacacagtgtcagcatc |
315 |
Q |
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| T |
52729290 |
caccttttctcttttattttagtgttaaaattaaattgttatatttgca---------ctgtcatcacctctagcttgtaagcaacacagtttcagcatc |
52729200 |
T |
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Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 24 - 200
Target Start/End: Original strand, 16727932 - 16728108
Alignment:
| Q |
24 |
acagaatattccggagtcgttaacagcaagactgttgaacatggtagtgttggacgtgcactcaaaccagcttaggtctctcccaaactccattggttgc |
123 |
Q |
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|||||| ||||||||||| |||||||||||| | || ||| ||| | |||||||||||||||| ||||||||||| || || || || ||||||||||| |
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| T |
16727932 |
acagaacattccggagtcattaacagcaagattattaaacttggaaatgttggacgtgcactccaaccagcttagatccctacccaattccattggttgt |
16728031 |
T |
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| Q |
124 |
ctctctaggctcaagcttttgaatgtctccggcaacctcattcatacccttcccaaaacaattgagaattgcaggtt |
200 |
Q |
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| T |
16728032 |
ctctctaaactcaaagttttgaatgtctctggaaacttcatccaatccctccctgcaaccattgagaattgcaggtt |
16728108 |
T |
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