View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19856_high_21 (Length: 338)
Name: NF19856_high_21
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_high_21 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
| [»] scaffold0236 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 43703541 - 43703878
Alignment:
| Q |
1 |
tcagatggttcagcaataaatcgttggagtctatgcacagtagatcaagttgaagaactaaaagccattattaaagttattccattgtggtcaacagcga |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43703541 |
tcagatggttcagcgataaatcgttggagtctatgcacagtagatcaagttgaagaactaaaagccattattaaagttattccattgtggtcaacagcga |
43703640 |
T |
|
| Q |
101 |
tcacaatgtctattaacattggaggctcatttggattgctgcaagctaaatccttagacagacatatcatttcaagttcaaactttgaagtaccagcaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
43703641 |
tcacaatgtctattaacattggaggctcatttggattgctgcaagctaaatccttagacagacatatcatttcaagttcaaactttgaagtaccagcagg |
43703740 |
T |
|
| Q |
201 |
atcttattctgttatcttgatagttgcaatattaatatggataattatctatgatcgtgttcttattcctttagcatcaaagataagagggaagcccgta |
300 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43703741 |
atctttttctgttatcttgatagttgcaatattaatatggataattatctatgatcgtgttcttattcctttagcatcaaagataagagggaagcccgta |
43703840 |
T |
|
| Q |
301 |
attatcagtccaaagaaaagaatgggaattgggttgtt |
338 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43703841 |
attatcagcccaaagaaaagaatgggaattgggttgtt |
43703878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 43714512 - 43714849
Alignment:
| Q |
1 |
tcagatggttcagcaataaatcgttggagtctatgcacagtagatcaagttgaagaactaaaagccattattaaagttattccattgtggtcaacagcga |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43714512 |
tcagatggttcagcgataaatcgttggagtctatgcacagtagatcaagttgaagaactaaaagccattattaaagttattccattgtggtcaacagcga |
43714611 |
T |
|
| Q |
101 |
tcacaatgtctattaacattggaggctcatttggattgctgcaagctaaatccttagacagacatatcatttcaagttcaaactttgaagtaccagcaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
43714612 |
tcacaatgtctattaacattggaggctcatttggattgctgcaagctaaatccttagacagacatatcatttcaagttcaaactttgaagtaccagcagg |
43714711 |
T |
|
| Q |
201 |
atcttattctgttatcttgatagttgcaatattaatatggataattatctatgatcgtgttcttattcctttagcatcaaagataagagggaagcccgta |
300 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43714712 |
atctttttctgttatcttgatagttgcaatattaatatggataattatctatgatcgtgttcttattcctttagcatcaaagataagagggaagcccgta |
43714811 |
T |
|
| Q |
301 |
attatcagtccaaagaaaagaatgggaattgggttgtt |
338 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43714812 |
attatcagcccaaagaaaagaatgggaattgggttgtt |
43714849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 43686683 - 43687020
Alignment:
| Q |
1 |
tcagatggttcagcaataaatcgttggagtctatgcacagtagatcaagttgaagaactaaaagccattattaaagttattccattgtggtcaacagcga |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
43686683 |
tcagatggttccataataaatcgttggagtctctgcacagtagatcaagttgaagaattgaaagccattattaaagttattccattgtggtcaactggaa |
43686782 |
T |
|
| Q |
101 |
tcacaatgtctattaacattggaggctcatttggattgctgcaagctaaatccttagacagacatatcatttcaagttcaaactttgaagtaccagcaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||| | |
|
|
| T |
43686783 |
tcacaatgtctattaacattggaggctcatttggattgctgcaagctttatccttagacagacatatcatttcaaattcaaactttgaagtaccggcagg |
43686882 |
T |
|
| Q |
201 |
atcttattctgttatcttgatagttgcaatattaatatggataattatctatgatcgtgttcttattcctttagcatcaaagataagagggaagcccgta |
300 |
Q |
| |
|
||||| | | | ||| | || ||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
43686883 |
atcttttacaataatccttatctttgtaatacttatatggataattatctatgatcgtgttcttattcctttagcatcaaagataagagggaaaccagcg |
43686982 |
T |
|
| Q |
301 |
attatcagtccaaagaaaagaatgggaattgggttgtt |
338 |
Q |
| |
|
| ||||||||||| || |||||||||| |||||||||| |
|
|
| T |
43686983 |
agtatcagtccaatgataagaatgggacttgggttgtt |
43687020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 43728252 - 43728583
Alignment:
| Q |
1 |
tcagatggttcagcaataaatcgttggagtctatgcacagtagatcaagttgaagaactaaaagccattattaaagttattccattgtggtcaacagcga |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||| || ||||||||||||||||| ||||||||||||||| || ||| |||||||||||| ||||| |||| || |
|
|
| T |
43728252 |
tcagatggttcagcaataaatccttggagactctgcacagtagatcaagtagaagaactaaaagcccttgttagagttattccattatggtctacaggga |
43728351 |
T |
|
| Q |
101 |
tcacaatgtctattaacattggaggctcatttggattgctgcaagctaaatccttagacagacatatcatttcaagttcaaactttgaagtaccagcaag |
200 |
Q |
| |
|
||| |||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | |
|
|
| T |
43728352 |
tcatgatgtctcttaacattggtggatcatttggattgctgcaagctaaatccttagacagacatatc------acctcaaactttgaagtaccagcagg |
43728445 |
T |
|
| Q |
201 |
atcttattctgttatcttgatagttgcaatattaatatggataattatctatgatcgtgttcttattcctttagcatcaaagataagagggaagcccgta |
300 |
Q |
| |
|
||||| | ||||||| || ||| | ||||||| ||||||||| | |||| || ||||||||||||||| ||||||||||| |||||||||| || || |
|
|
| T |
43728446 |
atcttttagtgttatcatggtaggttcaatatttatatggatagtactctacgaccgtgttcttattcctctagcatcaaagctaagagggaaaccagtt |
43728545 |
T |
|
| Q |
301 |
attatcagtccaaagaaaagaatgggaattgggttgtt |
338 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43728546 |
aggatcagtccaaagataagaatgggaattgggttgtt |
43728583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 4 - 338
Target Start/End: Complemental strand, 24077 - 23749
Alignment:
| Q |
4 |
gatggttcagcaataaatcgttggagtctatgcacagtagatcaagttgaagaactaaaagccattattaaagttattccattgtggtcaacagcgatca |
103 |
Q |
| |
|
||||||||| |||||| | |||| ||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||| ||||| | | ||||| |
|
|
| T |
24077 |
gatggttcaagaataaacccctggaatctatgcacagtagatcaagtagaagaactaaaagccattgttagagttattccattatggtctagtgggatca |
23978 |
T |
|
| Q |
104 |
caatgtctattaacattggaggctcatttggattgctgcaagctaaatccttagacagacatatcatttcaagttcaaactttgaagtaccagcaagatc |
203 |
Q |
| |
|
||| | ||| | | ||||| |||||||||||||| ||||||||| |||| |||||||||||| || | |||||||||| ||||| |||| |
|
|
| T |
23977 |
tgatgacccttagcgtgggaggttcatttggattgcttcaagctaaaaccttgaacagacatatcacctcca------actttgaagttccagcgggatc |
23884 |
T |
|
| Q |
204 |
ttattctgttatcttgatagttgcaatattaatatggataattatctatgatcgtgttcttattcctttagcatcaaagataagagggaagcccgtaatt |
303 |
Q |
| |
|
|| |||||| | |||||| | || | ||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||| || || | |
|
|
| T |
23883 |
tttgagtgttattattatagttactttaattatatggatagttttctatgatctcgttcttattcctttagcatcaaagataagagggaaaccagttaag |
23784 |
T |
|
| Q |
304 |
atcagtccaaagaaaagaatgggaattgggttgtt |
338 |
Q |
| |
|
||| || |||||||||||||||||||||| ||||| |
|
|
| T |
23783 |
atcggtgcaaagaaaagaatgggaattggtttgtt |
23749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 4 - 338
Target Start/End: Original strand, 25273651 - 25273979
Alignment:
| Q |
4 |
gatggttcagcaataaatcgttggagtctatgcacagtagatcaagttgaagaactaaaagccattattaaagttattccattgtggtcaacagcgatca |
103 |
Q |
| |
|
||||||||| |||||| | |||| |||||||||||||||||| || |||||| | ||||||||| ||| |||||||||||| ||||| | | ||||| |
|
|
| T |
25273651 |
gatggttcaagaataaacccctggaatctatgcacagtagatcaggtagaagaatttaaagccattgttagagttattccattatggtctagtgggatca |
25273750 |
T |
|
| Q |
104 |
caatgtctattaacattggaggctcatttggattgctgcaagctaaatccttagacagacatatcatttcaagttcaaactttgaagtaccagcaagatc |
203 |
Q |
| |
|
||| | ||| ||| ||| | |||||||||||||| ||||||||| |||| |||||||||||| || | |||||||||| ||||| |||| |
|
|
| T |
25273751 |
tgatgacccttagcatgggaagttcatttggattgcttcaagctaaaaccttgaacagacatatcacctcca------actttgaagttccagcgggatc |
25273844 |
T |
|
| Q |
204 |
ttattctgttatcttgatagttgcaatattaatatggataattatctatgatcgtgttcttattcctttagcatcaaagataagagggaagcccgtaatt |
303 |
Q |
| |
|
|| ||||||| |||| | | || | ||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||| || || | |
|
|
| T |
25273845 |
tttgagtgttatcaatataggtacggtaattatatggatagttttctatgatcgcgttcttattcctttagcatcaaagataagagggaaaccagttaag |
25273944 |
T |
|
| Q |
304 |
atcagtccaaagaaaagaatgggaattgggttgtt |
338 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||| |
|
|
| T |
25273945 |
atcagtgcaaagaaaagaatgggaattggtttgtt |
25273979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 24 - 152
Target Start/End: Original strand, 2690312 - 2690440
Alignment:
| Q |
24 |
ttggagtctatgcacagtagatcaagttgaagaactaaaagccattattaaagttattccattgtggtcaacagcgatcacaatgtctattaacattgga |
123 |
Q |
| |
|
|||||||||||||||| | |||||||| |||||| ||||||| |||||||||||||||||||||||||| ||| ||| ||||| ||||||||||| |
|
|
| T |
2690312 |
ttggagtctatgcacaattgatcaagtagaagaattaaaagctattattaaagttattccattgtggtctacaagtatcttgatgtcacttaacattgga |
2690411 |
T |
|
| Q |
124 |
ggctcatttggattgctgcaagctaaatc |
152 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |
|
|
| T |
2690412 |
ggctcatttggattactgcaagcgaaatc |
2690440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University