View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19856_high_27 (Length: 291)
Name: NF19856_high_27
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 4172055 - 4172330
Alignment:
| Q |
1 |
atcttcctcattaatccacttcttcaaattatgaaatgaaacattaaatttaggatcaagaacacactcaaccattggagctaaacaaagttcagtccct |
100 |
Q |
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| T |
4172055 |
atcttcctcataaatccacttcttgaaattatgaaatgaaacattaaatttaggatcaagaacacactcaaccattggagctaaacaaagttcagtccct |
4172154 |
T |
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| Q |
101 |
ttaacaagaagctctgaagtaactgtgagagcataagcttcttcttcattttccaattcttgattcgttactatctcaaagaatccattgtgtgcaagga |
200 |
Q |
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| T |
4172155 |
ttaacaagaagctctgaagtaactgtgagagcataagcttcttcttcattttccaattcttgattcgttactatctcaaagaatccattgtgtgcaagga |
4172254 |
T |
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| Q |
201 |
gacgcatgagacgctgcacattatcgactttggttgatggaatttgaagaattgaaactaagtttgaaagagtaat |
276 |
Q |
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| T |
4172255 |
gacgcatgagacgctgcacgttatcgactttggttgatggaatttgaagaattgaaactaagtttgaaagagtaat |
4172330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 53 - 276
Target Start/End: Complemental strand, 4159895 - 4159672
Alignment:
| Q |
53 |
ggatcaagaacacactcaaccattggagctaaacaaagttcagtccctttaacaagaagctctgaagtaactgtgagagcataagcttcttcttcatttt |
152 |
Q |
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| T |
4159895 |
ggatcaagaacacactcaaccattggagctaaacaaagttcagttcctttaacaagaagctctgaagcaacagtgagagcataagcttcttcttcatttt |
4159796 |
T |
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| Q |
153 |
ccaattcttgattcgttactatctcaaagaatccattgtgtgcaaggagacgcatgagacgctgcacattatcgactttggttgatggaatttgaagaat |
252 |
Q |
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| T |
4159795 |
ctaattcttgatttgtaattatctcaaagaatccattgtgtgcgaggtaacgcatgagacgctgcacgttatcgactttggttgatggaatttgaagaat |
4159696 |
T |
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| Q |
253 |
tgaaactaagtttgaaagagtaat |
276 |
Q |
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| T |
4159695 |
tgaaactaagtttgaaagagtaat |
4159672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 270
Target Start/End: Original strand, 4177730 - 4177932
Alignment:
| Q |
53 |
ggatcaagaacacactcaaccattggagctaaacaaagttcagtccctttaacaagaagctctgaagtaactgtgagagcataagcttcttcttcatttt |
152 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||| | ||| |||||||||||||||||| ||| ||||||||||||| |||||||| ||| |
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| T |
4177730 |
ggatcaagaacacactcaaccattggtgctaaacaaagatcactacctctaacaagaagctctgaagcaacagtgagagcataagactcttcttctttt- |
4177828 |
T |
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| Q |
153 |
ccaattcttgattcgttactatctcaaagaatccattgtgtgcaaggagacgcatgagacgctgcacattatcgactttggttgatggaatttgaagaat |
252 |
Q |
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| T |
4177829 |
--------------gtaattatctcaaagaatccgttgtgcgcgaggtaacgcatgagacgccgcacgttacctattttcgacgatggaacttgaagaat |
4177914 |
T |
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| Q |
253 |
tgaaactaagtttgaaag |
270 |
Q |
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||||||||| |||||||| |
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| T |
4177915 |
tgaaactaaatttgaaag |
4177932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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