View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19856_high_3 (Length: 583)
Name: NF19856_high_3
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 167 - 568
Target Start/End: Original strand, 115467 - 115868
Alignment:
| Q |
167 |
ctttcaatttcctataattattaattgtaggcagaaggatatgaagtttcagctgagcttgaatttcttgatcagcaaaacctcatattaggtatggaga |
266 |
Q |
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| T |
115467 |
ctttcaatttcctataattattaattgtaggcagaaggatatgaagtttcagctgagcttgaatttcttgatcagcaaaacctcatattaggtatggaga |
115566 |
T |
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| Q |
267 |
acagggccctcaaacaacgcttggacagtttatctcaagaacacttcatcaaatgttgtgagtatttatttttacaacttccattcaacacagaaaaatt |
366 |
Q |
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| T |
115567 |
acagggccctcaaacaacgcttggacagtttatctcaagaacacttcatcaaatgttgtgagtatttatttttacaacttccattcaacacagaaaaatt |
115666 |
T |
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| Q |
367 |
aattgttgtacttatccccaagcttttctgaatcacgaccagagttttaaattgaggtatgttatagtaatataaaagttttagaggtctctccaacaac |
466 |
Q |
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| T |
115667 |
aattgctgtacttatacccaaggttttctgaatcacgaccagagttttaaattgaggtatgttatagtaatataaaagttttagaggtctctccaacaac |
115766 |
T |
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| Q |
467 |
tacaatacaatcacattttcttaaaatatcaaaattcacagcataaatgcaactataatttaaaaccttaagtataccaatgtcataatattttgtggta |
566 |
Q |
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| T |
115767 |
tacaatacaatcacattttcttaaaatatcaaagttcacagcataaatgcaactataatttaaaaccttaagtataccaatgtcataatattttgtggta |
115866 |
T |
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| Q |
567 |
tt |
568 |
Q |
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| T |
115867 |
tt |
115868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 115310 - 115399
Alignment:
| Q |
6 |
aatatagaaattcaggtcaacaacaccgggcaaggaaggctcaatacattggagaactagaaagaagtgtccaagctttacaggtaagac |
95 |
Q |
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| T |
115310 |
aatatagaaattcaggtcaacaacaccgggcaaggaaggctcaatacattggagaactagaaagaagtgtccaagctttacaggtaagac |
115399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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