View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19856_high_35 (Length: 249)
Name: NF19856_high_35
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_high_35 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 5492575 - 5492327
Alignment:
| Q |
1 |
aatgccttataaatttatacatcataattaatgaaacagattgtgttgaaattaaggctcaataatacaaacacgaataatagaccttcaataatac--a |
98 |
Q |
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| T |
5492575 |
aatgccttataaatttatagatcataattaatgaaacagattgtgttgaaattaaggctcaataatacaaacacgaataatagaccttcaataatacata |
5492476 |
T |
|
| Q |
99 |
taggataagataggagtcgctttgtgataatagtatagtgtgggttaacttaaccattacattaaaatgtccacaaagtcaatatat---tcnnnnnnnn |
195 |
Q |
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| T |
5492475 |
taggataagataggaatcgctttgtgataatagtatagtgtgggttaacttaaccattacattaaaatgtccacaaagtcaatatatatatatttttttt |
5492376 |
T |
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| Q |
196 |
nacaaaccaaaatgaaatatattagattaaaatgagtggttcatctcac |
244 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5492375 |
tacaagccaaaatgaaatatattagattaaaatgagtggttcatctcac |
5492327 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 35499534 - 35499578
Alignment:
| Q |
197 |
acaaaccaaaatgaaatatattagattaaaatgagtggttcatct |
241 |
Q |
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| T |
35499534 |
acaaaccaaaatgaaatatattagattaaaaagagtgattcatct |
35499578 |
T |
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