View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19856_low_1 (Length: 684)
Name: NF19856_low_1
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 7495322 - 7495588
Alignment:
| Q |
18 |
gttgctgtgaaagtcaaaacatagaatatttgcagcataatcattgggattgtaatatgtattctctgtaatccaatgataaacaccattaacaagagtg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7495322 |
gttgctgtgaaagtcaaaacatagaatatttgcagcataatcattgggatagtaatatgtattctctgtaatccaatgataaacaccattaacaagagtg |
7495421 |
T |
|
| Q |
118 |
ttgtatttagaaggacgttgacgcatgatgatagttaaaggatgaggatgttgagtaggggtacataatttagtacttagattataaacttctgcgaagg |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
7495422 |
ttgtatttagaaggacgttgacgcgtgatgatagttaaaggatgaggatgttgagtaggggtccataatttagtacttagattataaacttccgcgaagg |
7495521 |
T |
|
| Q |
218 |
aaatataatgtttcgttgtcacagagcaataattgatatgaaatttcacagctttgaagttgatgtt |
284 |
Q |
| |
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| T |
7495522 |
aaatataatgtttcattgtcacagagcaataattgatatgaaatttcacagctttgaagttgatgtt |
7495588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 261 - 592
Target Start/End: Original strand, 7488081 - 7488416
Alignment:
| Q |
261 |
tttcacagctttgaagttgatgttgtttggatcatcagcaccgaaaccatacatgcgtgagtcgttgtcaaggcagagactcggaggaacacggtggacc |
360 |
Q |
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||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7488081 |
tttcacaactttgaagttgatgttgttgggatcatcggcaccgaaaccatacatgcatgagtcgttatcaaggcagagactcggaggaacacggtggacc |
7488180 |
T |
|
| Q |
361 |
tctctag-ggttgggttccacataattaactcatcgagacaacttttatggaaccgacacaaacgtttaagacagaaaacaccgttgcaactaccatagg |
459 |
Q |
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| T |
7488181 |
tctctagttgtagggttccacataattaactcatcaagacaactcttatgaaaccaacacaaaccttggagacagaaaacgccattgcaactaccatatg |
7488280 |
T |
|
| Q |
460 |
attctattcttat---aggatgaaagacgttgttggaaaagaagggtttgatgtgtgttacgttgtcacatgagagaagggttacatagggtattgtttt |
556 |
Q |
| |
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|||| |||||||| || || | | |||||||||||| || |||||||||| ||||| ||| |||||||||||| |||||||||||| |||||| |
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| T |
7488281 |
attccattcttataaaagtgcgacaattgctgttggaaaagagggatttgatgtgtattacggtgtgacatgagagaagagttacatagggttttgtttc |
7488380 |
T |
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| Q |
557 |
ataaagaatcatgagactatggctatcagacatgtt |
592 |
Q |
| |
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|| ||| ||||||||| || | |||||||||||||| |
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| T |
7488381 |
atgaaggatcatgagattaggactatcagacatgtt |
7488416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 591 - 684
Target Start/End: Original strand, 7499702 - 7499794
Alignment:
| Q |
591 |
ttcatgatcaagaaacataaaaaactgagacatcattctaaagccagccatgtattaacagatagtgccatatataaacaattagatcagactt |
684 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7499702 |
ttcatgatctagaaacataaaaaactgagacatcattctaaaaccagccatgtattaacagatagtg-catatataaacaattagatcagactt |
7499794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 26 - 403
Target Start/End: Original strand, 7474982 - 7475354
Alignment:
| Q |
26 |
gaaagtcaaaacatagaatatttgcagcataatcattgggattgtaatatgtattctctgtaatccaatgataaacaccattaacaagagtgttgtattt |
125 |
Q |
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|||||| ||| ||||| ||||||||| ||| ||||||| ||| | | ||| ||| | ||||||||||||||||| || ||||||||| |||| ||||| |
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| T |
7474982 |
gaaagttaaagcataggatatttgcaacatcatcattgcgatagaagaatgcattgtttgtaatccaatgataaatgccgttaacaagattgttatattt |
7475081 |
T |
|
| Q |
126 |
agaaggacgttgacgcatgatgatagttaaaggatgaggatgttgagtaggggtacataatttagtacttagattataaacttctgcgaaggaaatataa |
225 |
Q |
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|| ||| || || |||||||||| |||||| ||| |||| | ||||| || ||| ||||||||| |||| |||||||||| || | ||||||||| |
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| T |
7475082 |
ggagggaatttttcgtgtgatgatagtaaaaggaggagcatgtagggtaggagtccatgatttagtacctagactataaacttccgcccatgaaatataa |
7475181 |
T |
|
| Q |
226 |
tgtttcgttgtcacagagcaataattgatatgaaatttcacagctttgaagttgatgttgtttggatcatcagcaccgaaaccatacatgcgtgagtcgt |
325 |
Q |
| |
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|||||| || || | |||| |||| ||| | ||||||| ||||||| | ||| ||||||||||||| ||||| ||||||||||| ||| | | |
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| T |
7475182 |
tgtttc-ttctc-----gtaatacttgacatggagtttcacaactttgaaatcaatgatgtttggatcatctgcaccaaaaccatacatagatgatttgg |
7475275 |
T |
|
| Q |
326 |
tgtcaaggcagagactcggaggaacacggtggacctctctag-ggttgggttccacataattaactcatcgagacaact |
403 |
Q |
| |
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| || |||||| | | || |||| ||| ||||||||||||| ||||||||||| |||||||||||||| |||||||| |
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| T |
7475276 |
tatcgaggcagctagtagggggaatacgatggacctctctagttgttgggttccaaataattaactcatctagacaact |
7475354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 416 - 548
Target Start/End: Original strand, 7475400 - 7475532
Alignment:
| Q |
416 |
acacaaacgtttaagacagaaaacaccgttgcaactaccataggattctattcttataggatgaaagacgttgttggaaaagaagggtttgatgtgtgtt |
515 |
Q |
| |
|
|||||||| ||| |||||||||||||| ||| |||||||||| ||||| ||| ||||||| ||| | |||| |||||||| || ||||||||| || |
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| T |
7475400 |
acacaaacctttgagacagaaaacaccattgaaactaccatatgattcaattgttataggttgatgggagttgctggaaaagggggatttgatgtgcatt |
7475499 |
T |
|
| Q |
516 |
acgttgtcacatgagagaagggttacatagggt |
548 |
Q |
| |
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| T |
7475500 |
aggttgtcacgtgagagaagggttatatagggt |
7475532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 84 - 209
Target Start/End: Complemental strand, 6944130 - 6944002
Alignment:
| Q |
84 |
tgtaatccaatgataaacaccattaacaagagtgttgtatttagaaggacgttgacgcatgatgatagttaa---aggatgaggatgttgagtaggggta |
180 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||| ||||| | |||| |||||| |||||||||| || |||| |||||||| | |||||||| |
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|
| T |
6944130 |
tgtaatccaatgataaacgccgttaacaagagtgttatatttgaagggacattgacgtgtgatgatagtaaaaggaggaggaggatgtcgggtaggggtc |
6944031 |
T |
|
| Q |
181 |
cataatttagtacttagattataaacttc |
209 |
Q |
| |
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||| ||||||| ||||| |||||||||| |
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| T |
6944030 |
catgatttagtgattagactataaacttc |
6944002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 486 - 544
Target Start/End: Complemental strand, 6943733 - 6943675
Alignment:
| Q |
486 |
ttgttggaaaagaagggtttgatgtgtgttacgttgtcacatgagagaagggttacata |
544 |
Q |
| |
|
|||||||||||| || |||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
6943733 |
ttgttggaaaagggggatttgatgtgtattaggttgtcacatgagagaagggttacata |
6943675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 7873426 - 7873375
Alignment:
| Q |
82 |
tctgtaatccaatgataaacaccattaacaagagtgttgtatttagaaggac |
133 |
Q |
| |
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|||||||||||||||||||| || |||||||||||||| ||| ||||||||| |
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| T |
7873426 |
tctgtaatccaatgataaacgccgttaacaagagtgttatatctagaaggac |
7873375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 658
Target Start/End: Complemental strand, 8139134 - 8139087
Alignment:
| Q |
611 |
aaaactgagacatcattctaaagccagccatgtattaacagatagtgc |
658 |
Q |
| |
|
||||||||||||| |||| |||| ||||||||||||||| |||||||| |
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| T |
8139134 |
aaaactgagacataattccaaagtcagccatgtattaactgatagtgc |
8139087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 594 - 624
Target Start/End: Complemental strand, 8139198 - 8139168
Alignment:
| Q |
594 |
atgatcaagaaacataaaaaactgagacatc |
624 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
8139198 |
atgatcaagaaacataaaaaactgagacatc |
8139168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 13877808 - 13877850
Alignment:
| Q |
83 |
ctgtaatccaatgataaacaccattaacaagagtgttgtattt |
125 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||| |
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| T |
13877808 |
ctgtaatccaatgataaatgccattaacaagaatgttgtattt |
13877850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 90 - 122
Target Start/End: Complemental strand, 669281 - 669249
Alignment:
| Q |
90 |
ccaatgataaacaccattaacaagagtgttgta |
122 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
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| T |
669281 |
ccaatgataaacaccattaacaagagtattgta |
669249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 261 - 313
Target Start/End: Complemental strand, 6943950 - 6943898
Alignment:
| Q |
261 |
tttcacagctttgaagttgatgttgtttggatcatcagcaccgaaaccataca |
313 |
Q |
| |
|
||||||| ||||||| | |||| |||| | ||||||||||||||||||||||| |
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| T |
6943950 |
tttcacaactttgaaatcgatgatgttggaatcatcagcaccgaaaccataca |
6943898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 123
Target Start/End: Original strand, 31103692 - 31103731
Alignment:
| Q |
84 |
tgtaatccaatgataaacaccattaacaagagtgttgtat |
123 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
31103692 |
tgtaatccaataataaacaccgttaacaagagtgttgtat |
31103731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 31097139 - 31097177
Alignment:
| Q |
85 |
gtaatccaatgataaacaccattaacaagagtgttgtat |
123 |
Q |
| |
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|||||||||||||||||||| ||| |||||||||||||| |
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| T |
31097139 |
gtaatccaatgataaacaccgttagcaagagtgttgtat |
31097177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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