View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19856_low_10 (Length: 412)
Name: NF19856_low_10
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 10 - 391
Target Start/End: Complemental strand, 47729269 - 47728892
Alignment:
| Q |
10 |
attatactagcctatgccattattaccatctctaattacttgtactcaattttttgtatttcttccacagacatggctaccttcacctctattaccaatc |
109 |
Q |
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| T |
47729269 |
attatactagcctatgccattattaccatctctaattacttgtactcaattttttgtatttcttccacagacatggctaccttcacctctattaccaatc |
47729170 |
T |
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| Q |
110 |
tacatacaaaatatacatagagcaaaacatggaagtgattcaggtagctacgacacagagggaaggtgagaaacatgtcaacttttcttattgatatttt |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47729169 |
tacatacaaaatatacatagagcaaaacatggaagtgattcgggtagctatgacacagagggaaggtgagaaacatgtcaacttttcttattgatatttt |
47729070 |
T |
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| Q |
210 |
gtacgtactatcaagtactgttgctaaaacaatattttttaggttcattccggcaaatttggaactaatgttcagtaagtatgctcgtgaagtgcctgat |
309 |
Q |
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| T |
47729069 |
----gtactatcaagtactgttgctaaaacaatattttttaggttcattccggcaaatttggaactaatgttcagtaagtatgctcgtgaagtgcctgat |
47728974 |
T |
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| Q |
310 |
aaattaacaatgtgggagctatggcacatgactcaagcaaacagtgttgcatatgacttcttcggctggtaatttctatccg |
391 |
Q |
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| T |
47728973 |
aaattaacaatgtgggagctatggcacatgactcaagcaaacagtgttgcatatgacttcttcggctggtaatttctatccg |
47728892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 32674325 - 32674267
Alignment:
| Q |
89 |
ccttcacctctattaccaatctacatacaaaatatacatagagcaaaacatggaagtga |
147 |
Q |
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| T |
32674325 |
ccttcacctctttttcctatatacatacacaacatacatagagcaaaacatgggagtga |
32674267 |
T |
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