View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19856_low_18 (Length: 347)
Name: NF19856_low_18
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_low_18 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 33951036 - 33951362
Alignment:
| Q |
1 |
gagcttctgaggggtggtagctccacacttgtgttaactggtttaggaggattggggaaaaccactctggctacaaagctttgttgggatgaagaagtta |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33951036 |
gagcttctgaggggtggtagctccacacttgtgttgactggtttaggaggattggggaaaaccactctggctacaaagctttgttgggatgaagaagtta |
33951135 |
T |
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| Q |
101 |
atggtaagtcataaatcctttttgccttatctcatgcatgtttggattagcagtgtgttagacagaatcatgaaaacttgaaagaaaaaattacgctgcc |
200 |
Q |
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| T |
33951136 |
atggtaagtcataaatcctttttgccttatctcatgcatgtttggattagcagtgtgttagacagaatcatgaaaacttgaaagaaaaaattacgctgcc |
33951235 |
T |
|
| Q |
201 |
accataattttgccaaattcaatttgattctaattaaacatgaacttatacatgaattatatatatcattgccttagatggtactcaataatatatggat |
300 |
Q |
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| T |
33951236 |
accataattttgccaaattcaatttgattc----taaacatgaacttatacatgaattatatatatcattgccttagatggtactcaataatatatggat |
33951331 |
T |
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| Q |
301 |
gnnnnnnnagtaaagaatggatggaaataag |
331 |
Q |
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| T |
33951332 |
gtttttttagtaaagaatggatggaaataag |
33951362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 33973631 - 33973957
Alignment:
| Q |
1 |
gagcttctgaggggtggtagctccacacttgtgttaactggtttaggaggattggggaaaaccactctggctacaaagctttgttgggatgaagaagtta |
100 |
Q |
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| T |
33973631 |
gagcttctgaggggtggtagctccacacttgtgttgactggtttaggaggattggggaaaaccactctggctacaaagctttgttgggatgaagaagtta |
33973730 |
T |
|
| Q |
101 |
atggtaagtcataaatcctttttgccttatctcatgcatgtttggattagcagtgtgttagacagaatcatgaaaacttgaaagaaaaaattacgctgcc |
200 |
Q |
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| T |
33973731 |
atggtaagtcataaatcctttttgccttatctcatgcatgtttggattagcagtgtgttagacagaatcatgaaaacttgaaagaaaaaattacgctgcc |
33973830 |
T |
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| Q |
201 |
accataattttgccaaattcaatttgattctaattaaacatgaacttatacatgaattatatatatcattgccttagatggtactcaataatatatggat |
300 |
Q |
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| T |
33973831 |
accataattttgccaaattcaatttgattc----taaacatgaacttatacatgaattatatatatcattgccttagatggtactcaataatatatggat |
33973926 |
T |
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| Q |
301 |
gnnnnnnnagtaaagaatggatggaaataag |
331 |
Q |
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| T |
33973927 |
gtttttttagtaaagaatggatggaaataag |
33973957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 33990521 - 33990749
Alignment:
| Q |
1 |
gagcttctgaggggtggtagctccacacttgtgttaactggtttaggaggattggggaaaaccactctggctacaaagctttgttgggatgaagaagtta |
100 |
Q |
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|||||| | |||| |||||||||||| |||||||| || || ||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
33990521 |
gagcttataagggatggtagctccacccttgtgttgacgggcttaggaggattagggaaaaccactttggctacaaagctttgttgggatcaagaagtta |
33990620 |
T |
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| Q |
101 |
atggtaagtcataaatcctttttgccttatctcatgcatgtttggattagcagtgtgttagacagaatcatgaaaacttgaaagaaaaaattacgctgcc |
200 |
Q |
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| T |
33990621 |
atggtaagtcataaatcctctttggc-tctctcatgcatgtttggattagcggtgtgttagacataatcaaagaaacttga---aaaaaattacactgcc |
33990716 |
T |
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| Q |
201 |
accataattttgccaaattcaatttgattctaa |
233 |
Q |
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|||||||||||| |||||||| |||| |||||| |
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| T |
33990717 |
accataattttgtcaaattcactttgtttctaa |
33990749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 33911804 - 33911914
Alignment:
| Q |
4 |
cttctgaggggtggtagctccacacttgtgttaactggtttaggaggattggggaaaaccactctggctacaaagctttgttgggatgaagaagttaatg |
103 |
Q |
| |
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||||| |||| |||||| || || ||| |||| ||||||||||| ||| |||| ||||||||| ||||||||||||| |||| |||| || ||||||| | |
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| T |
33911804 |
cttctcagggatggtagatctactcttttgttgactggtttaggtggaatgggaaaaaccactttggctacaaagctgtgtttggatcaacaagttaagg |
33911903 |
T |
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| Q |
104 |
gtaagtcataa |
114 |
Q |
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| T |
33911904 |
gtaagtcataa |
33911914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 33939498 - 33939575
Alignment:
| Q |
32 |
tgttaactggtttaggaggattggggaaaaccactctggctacaaagctttgttgggatgaagaagttaatggtaagt |
109 |
Q |
| |
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|||| |||||| | || ||| |||| ||||| ||||||||||||||||| |||| |||||| ||||||| ||||||| |
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| T |
33939498 |
tgttgactggtctgggtggaatgggaaaaacaactctggctacaaagctgtgtttggatgatcaagttaagggtaagt |
33939575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 43 - 162
Target Start/End: Complemental strand, 8278920 - 8278802
Alignment:
| Q |
43 |
ttaggaggattggggaaaaccactctggctacaaagctttgttgggatgaagaagttaatggtaagtcataaatcctttttgccttatctcatgcatgtt |
142 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||| ||||||||| |||| | | ||||||||||||| |
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| T |
8278920 |
ttaggaggattggggaaaaccactttggctacaaagctttgttgggatgaacaagttaagggtaagtgataaatcctctttggc-tctctcatgcatgtt |
8278822 |
T |
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| Q |
143 |
tggattagcagtgtgttaga |
162 |
Q |
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|||||||||||||||||||| |
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| T |
8278821 |
tggattagcagtgtgttaga |
8278802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 10570 - 10644
Alignment:
| Q |
19 |
agctccacacttgtgttaactggtttaggaggattggggaaaaccactctggctacaaagctttgttgggatgaa |
93 |
Q |
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||||| || |||||||| |||||||| ||||| ||||| ||||||||||||||||| || ||||||||||||||| |
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| T |
10570 |
agctcaacccttgtgttgactggtttgggagggttgggaaaaaccactctggctaccaatctttgttgggatgaa |
10644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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