View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19856_low_19 (Length: 345)
Name: NF19856_low_19
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 233 - 341
Target Start/End: Original strand, 699791 - 699899
Alignment:
| Q |
233 |
ctaacttatttgttatatcacagactagggtaggaataaattaaaccattcgatatggtatcaaaattgtggattaatgttgtggatttgaaaaatatgg |
332 |
Q |
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| T |
699791 |
ctaaattatttattatatcacagactagggtaggaataaattaaaccatccgatatggtatcaaaattgtggattaatgttgtggatttgaaaaatatag |
699890 |
T |
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| Q |
333 |
gaataaaaa |
341 |
Q |
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| T |
699891 |
gaataaaaa |
699899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 57 - 168
Target Start/End: Original strand, 698565 - 698676
Alignment:
| Q |
57 |
aacaagtaacatatatttgagtttatagattataannnnnnncactcaaaggtcgtccttttgttttgaagggttcatccttattagttaatttaattca |
156 |
Q |
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| T |
698565 |
aacaagtaacatatatttgagtttatagattataatttttttcactcaaaggtcatccttttgttttgaaggtttcatccttattagttaatttaattaa |
698664 |
T |
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| Q |
157 |
acaataaattct |
168 |
Q |
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| T |
698665 |
acaataaattct |
698676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 699718 - 699779
Alignment:
| Q |
185 |
ttatcagctaatttatatgttattctctttaggttcatttcctatcaactaacttatttgtt |
246 |
Q |
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| T |
699718 |
ttatcaactaatttatatgttattctctttaggttcatttcctatcaactaacttatttgtt |
699779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 698486 - 698543
Alignment:
| Q |
11 |
cataggacaatttgagtagtttttaacnnnnnnnatgagctactacaacaagtaacat |
68 |
Q |
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| T |
698486 |
cataggacaattttagtagtttttaactttttttatgagttactacaacaagtaacat |
698543 |
T |
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