View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19856_low_22 (Length: 338)
Name: NF19856_low_22
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_low_22 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 11 - 338
Target Start/End: Original strand, 4171744 - 4172071
Alignment:
| Q |
11 |
atgaacatgtccccaccaacatatgtcaaattgttatttccacataaattctctacaacctttggacgatcaaaaacaatacatctcaacttaggaaatg |
110 |
Q |
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||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
4171744 |
atgaacatgtccccaccgacatatgtcaaattgttacttccacataaattctctacaacctttggacgatcaaaaacaacacatctcaacttaggatatg |
4171843 |
T |
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| Q |
111 |
tctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgaatccaactcctcaaacacaaaattgcaatctttcaatgccaaatt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4171844 |
tctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgaatccaacccctcaaacacaaaattgcaatctttcaatgccaaatt |
4171943 |
T |
|
| Q |
211 |
aatcattttggaatcactagccatagcatcattgaacaatctattataatcaggatttttgttaagaaactcccataaatcacatcctaaagaggtagca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4171944 |
aatcattttggaatcactagccatagcatcattgaacaatctattatattcaggatttttgttaagaaactcccataaatcacatcctaaagaggtagca |
4172043 |
T |
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| Q |
311 |
aagagggtgagatcttcctcattaatcc |
338 |
Q |
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|||||||||||||||||||||| ||||| |
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| T |
4172044 |
aagagggtgagatcttcctcataaatcc |
4172071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 332
Target Start/End: Complemental strand, 4160258 - 4159937
Alignment:
| Q |
11 |
atgaacatgtccccaccaacatatgtcaaattgttatttccacataaattctctacaacctttggacgatcaaaaacaatacatctcaacttaggaaatg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
4160258 |
atgaacatgtccccaccaacatatgtcaaattgttacttccacataaattctctacaacctttggacgatcaaaaacaacacaagtcaacttaggaaatg |
4160159 |
T |
|
| Q |
111 |
tctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgaatccaactcctcaaacacaaaattgcaatctttcaatgccaaatt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| ||||||||| |
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| T |
4160158 |
tctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattgcaatctttcattgccaaatt |
4160059 |
T |
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| Q |
211 |
aatcattttggaatcactagccatagcatcattgaacaatctattataatcaggatttttgttaagaaactcccataaatcacatcctaaagaggtagca |
310 |
Q |
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||||||||||||||||||||||| |||||||||| | ||| ||||||| ||||| ||||||||||||||||||||||||||||| |||||| | |||| |
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| T |
4160058 |
aatcattttggaatcactagccaaagcatcattgtataatgtattatactcagggtttttgttaagaaactcccataaatcacaacctaaattgacagca |
4159959 |
T |
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| Q |
311 |
aagagggtgagatcttcctcat |
332 |
Q |
| |
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|| || |||||||||||||||| |
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| T |
4159958 |
aatagagtgagatcttcctcat |
4159937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 12 - 338
Target Start/End: Original strand, 4177368 - 4177694
Alignment:
| Q |
12 |
tgaacatgtccccaccaacatatgtcaaattgttatttccacataaattctctacaacctttggacgatcaaaaacaatacatctcaacttaggaaatgt |
111 |
Q |
| |
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|||||||||||||||||||||| |||||||| || ||||| |||| ||||||||||| | ||| | |||||| ||||||||| ||||||||||||| || |
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| T |
4177368 |
tgaacatgtccccaccaacataagtcaaattattgcttccagataagttctctacaacttgtggcctatcaaacacaatacatttcaacttaggaaaagt |
4177467 |
T |
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| Q |
112 |
ctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgaatccaactcctcaaacacaaaattgcaatctttcaatgccaaatta |
211 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| | ||||||||||||| |||||| |||||||||| || |
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| T |
4177468 |
ctcacaaataattttaccagtggttccatttccaccaccaacatccacaattgattccaatccatcaaacacaaaatcacaatctctcaatgccaagttt |
4177567 |
T |
|
| Q |
212 |
atcattttggaatcactagccatagcatcattgaacaatctattataatcaggatttttgttaagaaactcccataaatcacatcctaaagaggtagcaa |
311 |
Q |
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|||| ||| |||||||||||||| |||||||| || |||||||||| ||||||||||| | |||||| ||||| ||| || | ||||||| | ||| |
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| T |
4177568 |
atcaatttagaatcactagccattgcatcattaaatgatctattatattcaggatttttatcaagaaaatcccaaaaaccagaccctaaagtaacaccaa |
4177667 |
T |
|
| Q |
312 |
agagggtgagatcttcctcattaatcc |
338 |
Q |
| |
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|||| || ||||||||||||| ||||| |
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| T |
4177668 |
agagtgtaagatcttcctcataaatcc |
4177694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 237
Target Start/End: Complemental strand, 34343695 - 34343521
Alignment:
| Q |
63 |
ctacaacctttggacgatcaaaaacaatacatctcaacttaggaaatgtctcacaaataatcttaccagttgttccatttccaccaccaacatccacaat |
162 |
Q |
| |
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||||||||| |||| ||||| |||||| |||| ||||||||||||| | |||||| ||||| || | || |||||| |||||||||||||||||||||| |
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| T |
34343695 |
ctacaacctgtggaagatcataaacaacacatttcaacttaggaaaagcctcacatataattctagctgtggttccagttccaccaccaacatccacaat |
34343596 |
T |
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| Q |
163 |
tgaatccaactcctcaaacacaaaattgcaatctttcaatgccaaattaatcattttggaatcactagccatagc |
237 |
Q |
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||||| | | | |||||||| | | |||| |||||| |||||||| | ||||| ||||||||||||||||| |
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| T |
34343595 |
agaatcaatcccttcaaacaccttactacaatttttcaaagccaaattcaccatttgagaatcactagccatagc |
34343521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 162
Target Start/End: Complemental strand, 34331071 - 34330989
Alignment:
| Q |
80 |
tcaaaaacaatacatctcaacttaggaaatgtctcacaaataatcttaccagttgttccatttccaccaccaacatccacaat |
162 |
Q |
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|||||||||| |||| | | ||||||||| | |||||| ||||| ||| | || ||||||||||||||||||||||||||||| |
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| T |
34331071 |
tcaaaaacaagacatttgaccttaggaaaagcctcacatataattttagccgtcgttccatttccaccaccaacatccacaat |
34330989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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