View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19856_low_24 (Length: 327)
Name: NF19856_low_24
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 32884648 - 32884947
Alignment:
| Q |
17 |
aacaatgtcatataagagaaacaaaattgaaaggggtaccaacatcatatattgtatcctttacaaaatctcaatccatacgatcatagaacttctccaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32884648 |
aacaatgtcatataagagaaacaaaattgaaaggggtaccaacatcatatattgtatcctttacaaaatctcaatccatacgatcatagaacttctccaa |
32884747 |
T |
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| Q |
117 |
atcgtctattgtatatatctttnnnnnnnnnnctttgatcgtgtattatatcctttnnnnnnnnnngttttgatgcaaccattaagtttcgagagcaatg |
216 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||| |
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| T |
32884748 |
atcgtctattgtatatatcttt-aaaaaaaaactttgatcgtgtattatatcctttaaaaaaaaaaagtttgatgcaaccattaaattttgagagcaatg |
32884846 |
T |
|
| Q |
217 |
atcacactgagttttgaacaaccacacatatgaattggatggataccac--gatcattcataatttcaatatattatgtatattgatcatcttacttgta |
314 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32884847 |
atcacactgaattttgaacaaccacacatatgagttggatggataccacatgatcattcataatttcaatatattatgtatattgatcatcttacttgta |
32884946 |
T |
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