View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19856_low_25 (Length: 324)

Name: NF19856_low_25
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19856_low_25
NF19856_low_25
[»] chr7 (36 HSPs)
chr7 (8-324)||(22868059-22868375)
chr7 (24-166)||(22801350-22801484)
chr7 (228-323)||(12278853-12278943)
chr7 (219-324)||(32287405-32287505)
chr7 (219-275)||(5409773-5409829)
chr7 (219-275)||(9778566-9778622)
chr7 (289-324)||(22602717-22602752)
chr7 (286-324)||(5548693-5548731)
chr7 (289-323)||(17851449-17851483)
chr7 (286-324)||(32308137-32308175)
chr7 (271-324)||(20549808-20549861)
chr7 (219-275)||(598269-598325)
chr7 (219-275)||(43027406-43027462)
chr7 (289-320)||(640134-640165)
chr7 (219-324)||(1401042-1401140)
chr7 (289-324)||(5835264-5835299)
chr7 (219-266)||(6490786-6490833)
chr7 (289-324)||(9482951-9482986)
chr7 (219-270)||(17852066-17852117)
chr7 (286-321)||(18013078-18013113)
chr7 (219-269)||(14729770-14729820)
chr7 (290-324)||(17307910-17307944)
chr7 (289-323)||(18213040-18213074)
chr7 (289-323)||(27732246-27732280)
chr7 (289-323)||(39138462-39138496)
chr7 (222-275)||(13770757-13770810)
chr7 (291-324)||(16341513-16341546)
chr7 (217-270)||(26033390-26033443)
chr7 (214-275)||(29763126-29763187)
chr7 (296-324)||(2424631-2424659)
chr7 (289-321)||(15902842-15902874)
chr7 (219-275)||(21930700-21930756)
chr7 (219-275)||(24339714-24339770)
chr7 (296-324)||(29787383-29787411)
chr7 (219-275)||(32308192-32308248)
chr7 (273-321)||(42720881-42720929)
[»] chr3 (35 HSPs)
chr3 (219-321)||(40993277-40993374)
chr3 (219-324)||(8789490-8789592)
chr3 (219-258)||(3730110-3730149)
chr3 (286-324)||(49505158-49505196)
chr3 (218-275)||(4987221-4987278)
chr3 (271-324)||(25093519-25093572)
chr3 (289-321)||(7928470-7928502)
chr3 (284-324)||(10690264-10690304)
chr3 (214-266)||(16789582-16789634)
chr3 (219-275)||(20503526-20503582)
chr3 (219-275)||(27505312-27505368)
chr3 (219-323)||(35222956-35223055)
chr3 (219-275)||(55401136-55401192)
chr3 (293-324)||(11493372-11493403)
chr3 (283-322)||(11507476-11507515)
chr3 (219-321)||(15999952-16000055)
chr3 (289-324)||(32804547-32804582)
chr3 (219-266)||(34185054-34185101)
chr3 (277-324)||(48202264-48202311)
chr3 (219-324)||(11251995-11252093)
chr3 (290-324)||(11313808-11313842)
chr3 (290-324)||(16192758-16192792)
chr3 (290-323)||(2731830-2731863)
chr3 (219-272)||(25074859-25074912)
chr3 (219-268)||(40052380-40052429)
chr3 (219-260)||(49651718-49651759)
chr3 (292-324)||(1438821-1438853)
chr3 (219-267)||(3163973-3164021)
chr3 (292-324)||(12704024-12704056)
chr3 (295-323)||(14840304-14840332)
chr3 (276-324)||(20691336-20691384)
chr3 (215-267)||(25775576-25775628)
chr3 (289-321)||(29508464-29508496)
chr3 (289-321)||(38731238-38731270)
chr3 (219-259)||(52369864-52369904)
[»] chr6 (35 HSPs)
chr6 (219-321)||(8776910-8777012)
chr6 (219-321)||(34595154-34595251)
chr6 (219-324)||(17327592-17327697)
chr6 (289-324)||(7265600-7265635)
chr6 (289-324)||(9025501-9025536)
chr6 (289-324)||(11591877-11591912)
chr6 (273-324)||(13360363-13360414)
chr6 (289-324)||(19040369-19040404)
chr6 (289-324)||(26562706-26562741)
chr6 (219-266)||(31959220-31959267)
chr6 (271-321)||(8101105-8101155)
chr6 (220-266)||(8389411-8389457)
chr6 (289-321)||(7027262-7027294)
chr6 (219-275)||(9107301-9107357)
chr6 (219-275)||(16766769-16766825)
chr6 (289-324)||(7086812-7086847)
chr6 (289-324)||(7377996-7378031)
chr6 (289-324)||(9617451-9617486)
chr6 (289-324)||(9629400-9629435)
chr6 (286-324)||(10339129-10339168)
chr6 (289-324)||(30866151-30866186)
chr6 (289-323)||(9658897-9658931)
chr6 (219-321)||(12696344-12696446)
chr6 (287-321)||(17341669-17341703)
chr6 (219-321)||(28152118-28152215)
chr6 (286-323)||(4388103-4388140)
chr6 (219-260)||(30781235-30781276)
chr6 (290-323)||(32511674-32511707)
chr6 (219-275)||(7248430-7248486)
chr6 (286-322)||(7740660-7740696)
chr6 (219-275)||(8365450-8365506)
chr6 (219-275)||(9629455-9629511)
chr6 (289-321)||(12627584-12627616)
chr6 (219-275)||(31384991-31385047)
chr6 (296-324)||(31579239-31579267)
[»] chr8 (29 HSPs)
chr8 (218-324)||(20679336-20679437)
chr8 (219-324)||(3025568-3025668)
chr8 (219-324)||(14134716-14134816)
chr8 (219-267)||(29510235-29510283)
chr8 (289-324)||(34897102-34897137)
chr8 (289-323)||(4786345-4786379)
chr8 (289-323)||(26902182-26902216)
chr8 (290-323)||(11803277-11803310)
chr8 (230-318)||(8293848-8293931)
chr8 (289-321)||(11927093-11927125)
chr8 (288-324)||(24362208-24362244)
chr8 (219-267)||(38487159-38487207)
chr8 (289-320)||(8847277-8847308)
chr8 (289-324)||(13844603-13844638)
chr8 (289-324)||(31236584-31236619)
chr8 (290-324)||(14731729-14731763)
chr8 (289-323)||(18964195-18964229)
chr8 (229-275)||(22943301-22943347)
chr8 (289-323)||(27213565-27213599)
chr8 (219-321)||(8343336-8343444)
chr8 (284-321)||(34222967-34223004)
chr8 (291-324)||(39954288-39954321)
chr8 (218-270)||(926729-926781)
chr8 (292-324)||(4611551-4611583)
chr8 (289-321)||(11944685-11944717)
chr8 (219-259)||(16641911-16641951)
chr8 (219-259)||(16987990-16988030)
chr8 (219-275)||(22652048-22652104)
chr8 (296-324)||(37283824-37283852)
[»] chr4 (30 HSPs)
chr4 (219-324)||(36635341-36635447)
chr4 (219-321)||(3947703-3947805)
chr4 (283-324)||(903939-903980)
chr4 (219-275)||(23292928-23292984)
chr4 (289-324)||(40613467-40613502)
chr4 (286-324)||(10499274-10499312)
chr4 (219-321)||(28964190-28964287)
chr4 (291-324)||(22440609-22440642)
chr4 (219-260)||(25950474-25950515)
chr4 (219-260)||(40784029-40784070)
chr4 (219-260)||(53381532-53381573)
chr4 (272-324)||(8402732-8402784)
chr4 (219-275)||(19482740-19482796)
chr4 (219-323)||(35161054-35161153)
chr4 (289-324)||(5775365-5775400)
chr4 (289-324)||(16189726-16189761)
chr4 (222-321)||(49431046-49431140)
chr4 (289-323)||(13134468-13134502)
chr4 (290-324)||(18576045-18576079)
chr4 (220-270)||(28084590-28084640)
chr4 (295-324)||(8423731-8423760)
chr4 (219-275)||(715547-715603)
chr4 (219-275)||(752873-752929)
chr4 (292-324)||(7970536-7970568)
chr4 (292-324)||(9996857-9996889)
chr4 (290-318)||(15029788-15029816)
chr4 (289-321)||(22234897-22234929)
chr4 (219-275)||(30982809-30982865)
chr4 (293-321)||(40179647-40179675)
chr4 (289-321)||(54580030-54580062)
[»] chr5 (23 HSPs)
chr5 (219-324)||(14873534-14873639)
chr5 (218-321)||(21190997-21191095)
chr5 (219-324)||(28588616-28588716)
chr5 (219-275)||(30098398-30098454)
chr5 (284-323)||(39758290-39758329)
chr5 (289-324)||(41091264-41091299)
chr5 (290-324)||(6471897-6471931)
chr5 (219-321)||(42893380-42893477)
chr5 (217-275)||(43001866-43001924)
chr5 (291-324)||(24273039-24273072)
chr5 (291-324)||(24389142-24389175)
chr5 (219-275)||(21576687-21576743)
chr5 (289-324)||(3966520-3966555)
chr5 (289-324)||(18421848-18421883)
chr5 (289-324)||(23015996-23016031)
chr5 (289-324)||(30502395-30502430)
chr5 (289-324)||(30542738-30542773)
chr5 (219-265)||(38464315-38464361)
chr5 (228-269)||(17088358-17088399)
chr5 (222-275)||(21194068-21194121)
chr5 (219-267)||(2419936-2419984)
chr5 (289-321)||(5467985-5468017)
chr5 (288-324)||(12264835-12264871)
[»] chr2 (38 HSPs)
chr2 (218-321)||(2438660-2438758)
chr2 (219-321)||(18840955-18841052)
chr2 (218-266)||(19942335-19942383)
chr2 (219-275)||(38117101-38117157)
chr2 (272-323)||(20242717-20242768)
chr2 (286-321)||(31808097-31808132)
chr2 (290-324)||(21616779-21616813)
chr2 (287-324)||(35449530-35449567)
chr2 (218-270)||(15657941-15657993)
chr2 (219-259)||(18622679-18622719)
chr2 (219-275)||(26769583-26769639)
chr2 (219-267)||(37419823-37419871)
chr2 (219-275)||(42511324-42511380)
chr2 (289-320)||(5367213-5367244)
chr2 (289-324)||(18889598-18889633)
chr2 (289-324)||(23718043-23718078)
chr2 (289-324)||(24105715-24105750)
chr2 (289-320)||(28524447-28524478)
chr2 (289-324)||(37411251-37411286)
chr2 (219-270)||(37559043-37559094)
chr2 (289-324)||(38355894-38355929)
chr2 (289-324)||(39279692-39279727)
chr2 (289-324)||(44860337-44860372)
chr2 (286-324)||(15909636-15909674)
chr2 (281-323)||(17776605-17776647)
chr2 (289-323)||(20922935-20922969)
chr2 (286-324)||(32749829-32749867)
chr2 (289-323)||(34784989-34785023)
chr2 (292-321)||(28677929-28677958)
chr2 (283-324)||(30527596-30527637)
chr2 (291-323)||(2665897-2665929)
chr2 (219-275)||(15972934-15972990)
chr2 (283-311)||(19614213-19614241)
chr2 (296-324)||(21782832-21782860)
chr2 (219-275)||(28596530-28596586)
chr2 (289-321)||(34691812-34691844)
chr2 (289-321)||(34714224-34714256)
chr2 (219-275)||(44860392-44860448)
[»] chr1 (51 HSPs)
chr1 (219-321)||(1486646-1486748)
chr1 (286-324)||(7918215-7918253)
chr1 (286-324)||(25361903-25361941)
chr1 (219-321)||(40258875-40258972)
chr1 (230-275)||(18190061-18190106)
chr1 (231-324)||(40181888-40181976)
chr1 (289-324)||(1864887-1864922)
chr1 (222-321)||(5898211-5898305)
chr1 (289-324)||(10233270-10233305)
chr1 (289-324)||(34371730-34371765)
chr1 (289-324)||(44482247-44482282)
chr1 (290-324)||(25098563-25098597)
chr1 (289-323)||(30749858-30749892)
chr1 (289-323)||(30771309-30771343)
chr1 (289-322)||(17705593-17705626)
chr1 (291-324)||(19324579-19324612)
chr1 (219-260)||(27965942-27965983)
chr1 (219-275)||(9828116-9828172)
chr1 (289-321)||(13997903-13997935)
chr1 (229-273)||(19562567-19562611)
chr1 (219-275)||(40917821-40917877)
chr1 (218-266)||(42359390-42359438)
chr1 (214-321)||(18337349-18337451)
chr1 (289-324)||(20157357-20157392)
chr1 (273-324)||(23636040-23636091)
chr1 (289-324)||(36878478-36878513)
chr1 (290-324)||(6427367-6427401)
chr1 (283-321)||(12611986-12612024)
chr1 (290-320)||(13436479-13436509)
chr1 (283-321)||(23622338-23622376)
chr1 (286-324)||(34712387-34712425)
chr1 (290-324)||(36906014-36906048)
chr1 (219-268)||(1704937-1704986)
chr1 (274-323)||(2784574-2784623)
chr1 (219-260)||(7918156-7918197)
chr1 (291-324)||(12443469-12443502)
chr1 (295-324)||(34298453-34298482)
chr1 (271-324)||(43492483-43492536)
chr1 (219-259)||(113370-113410)
chr1 (289-321)||(398772-398804)
chr1 (289-321)||(5944303-5944335)
chr1 (219-275)||(5944355-5944411)
chr1 (219-275)||(6414933-6414989)
chr1 (219-275)||(6427536-6427592)
chr1 (289-321)||(9828064-9828096)
chr1 (292-324)||(14332652-14332684)
chr1 (283-323)||(25934634-25934674)
chr1 (289-321)||(35919283-35919315)
chr1 (219-275)||(37598892-37598948)
chr1 (219-275)||(47989569-47989625)
chr1 (289-321)||(52903269-52903301)
[»] scaffold0123 (1 HSPs)
scaffold0123 (283-324)||(44526-44567)
[»] scaffold0652 (1 HSPs)
scaffold0652 (219-267)||(404-452)
[»] scaffold0128 (1 HSPs)
scaffold0128 (219-266)||(32774-32821)
[»] scaffold0019 (1 HSPs)
scaffold0019 (219-275)||(71797-71853)
[»] scaffold0003 (3 HSPs)
scaffold0003 (219-275)||(241666-241722)
scaffold0003 (273-321)||(348122-348170)
scaffold0003 (219-267)||(236916-236964)
[»] scaffold0171 (2 HSPs)
scaffold0171 (286-321)||(23531-23566)
scaffold0171 (289-321)||(23440-23472)
[»] scaffold0044 (1 HSPs)
scaffold0044 (289-324)||(53197-53232)
[»] scaffold0036 (2 HSPs)
scaffold0036 (289-324)||(9754-9789)
scaffold0036 (219-275)||(9678-9734)
[»] scaffold0020 (1 HSPs)
scaffold0020 (289-324)||(135319-135354)
[»] scaffold0008 (1 HSPs)
scaffold0008 (286-324)||(263376-263414)
[»] scaffold0793 (1 HSPs)
scaffold0793 (219-275)||(4823-4879)
[»] scaffold0103 (1 HSPs)
scaffold0103 (219-259)||(51900-51940)
[»] scaffold0022 (1 HSPs)
scaffold0022 (272-324)||(90860-90912)
[»] scaffold0004 (1 HSPs)
scaffold0004 (219-275)||(92883-92939)


Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 8 - 324
Target Start/End: Complemental strand, 22868375 - 22868059
Alignment:
Q  8 caaaggcaagagattaaaatgatattgatggacaaccaaatctccttcaccaagagatttttacgtaagtctctttgagcagacttaccattcatcaata 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22868375 caaaagcaagagattaaaatgatattgatggacaaccaaatctccttcaccaagagatttttacgtaagtctctttgagcagacttaccattcatcaata 22868276  T
Q  108 aagatataatgacaggagaatttaccacaacatgatcatgccttccaaaatttaaaaacaccaaagagcgcaaaagcaatatgttgaatatgggtgtaat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22868275 aagatataatgacaggagaatttaccacaacatgatcatgccttccaaaatttaaaaacaccaaagagcgcaaaagcaatatgttgaatatgggtgtaat 22868176  T
Q  208 gaccaagagcaatgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22868175 gaccaagagcaatgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactg 22868076  T
Q  308 aattatgtgattttctc 324  Q
    |||||||||||||||||    
T  22868075 aattatgtgattttctc 22868059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 22801484 - 22801350
Alignment:
Q  24 aaatgatattgatggacaaccaaatctccttcaccaagagatttttacgtaagtctctttgagcagacttaccattcatcaataaagatataatgacagg 123  Q
    |||||||||||||||||||||||||||||||||||||||||||         ||||||||||||| | ||||| ||||||||||||||||||||||||||    
T  22801484 aaatgatattgatggacaaccaaatctccttcaccaagagattc--------gtctctttgagcacagttaccgttcatcaataaagatataatgacagg 22801393  T
Q  124 agaatttaccacaacatgatcatgccttccaaaatttaaaaac 166  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  22801392 agaatttaccacaacatgttcatgccttccaaaatttaaaaac 22801350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 323
Target Start/End: Complemental strand, 12278943 - 12278853
Alignment:
Q  228 ggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgattttct 323  Q
    |||||||||| |||||| ||||||||||||||| |||||| ||||    ||||  || || ||||||||||||||||||||||||||| |||||||    
T  12278943 ggacactcctaggattaggtgtgtcccggtgtcagacacgcgttg----gtgtccgacac-gacacatataattacactgaattatgtcattttct 12278853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 324
Target Start/End: Original strand, 32287405 - 32287505
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgat 318  Q
    |||||||| ||||||||||||||||| ||||||||||||||| |||||      |||  |||  || || |||||||||| || ||||||||||||||||    
T  32287405 atgaagcacggacactcctcggattaggtgtgtcccggtgtcggacac-----ttgtcatgtccgacaccgacacatatacttgcactgaattatgtgat 32287499  T
Q  319 tttctc 324  Q
    ||||||    
T  32287500 tttctc 32287505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 5409773 - 5409829
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| ||||||||||||||||| | ||||||||||||| ||||||||| ||||    
T  5409773 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgt 5409829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 9778622 - 9778566
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| |||||||||| |||||| | ||||||||||||| ||||||||||||||    
T  9778622 atgaagcacggacactccttggattaggcgtgtcccggtgtcggacacgtgttgtgt 9778566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 22602717 - 22602752
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  22602717 gacacatataattacactgaattatgtgattttctc 22602752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 324
Target Start/End: Complemental strand, 5548731 - 5548693
Alignment:
Q  286 actgacacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  5548731 actgacacatataattacactgaattatttgattttctc 5548693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 323
Target Start/End: Complemental strand, 17851483 - 17851449
Alignment:
Q  289 gacacatataattacactgaattatgtgattttct 323  Q
    |||||||||||||||||||||||||||||||||||    
T  17851483 gacacatataattacactgaattatgtgattttct 17851449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 324
Target Start/End: Complemental strand, 32308175 - 32308137
Alignment:
Q  286 actgacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  32308175 actgacacatacaattacactgaattatgtgattttctc 32308137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 324
Target Start/End: Complemental strand, 20549861 - 20549808
Alignment:
Q  271 tgtgttgtgtttgatactgacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||  || || |||||||||||||||||||||||| |||||||||||    
T  20549861 tgtgttgtgtccgacaccgacacatataattacactgaattacgtgattttctc 20549808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 598325 - 598269
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| ||||||| ||||||||| | ||||||||||||| ||||||||| ||||    
T  598325 atgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgt 598269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 43027406 - 43027462
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| |||||||| |||||||| | ||||||||||||| ||||||||| ||||    
T  43027406 atgaagcacggacactcatcggattaggcgtgtcccggtgtcggacacgtgtcgtgt 43027462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 320
Target Start/End: Complemental strand, 640165 - 640134
Alignment:
Q  289 gacacatataattacactgaattatgtgattt 320  Q
    ||||||||||||||||||||||||||||||||    
T  640165 gacacatataattacactgaattatgtgattt 640134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 324
Target Start/End: Complemental strand, 1401140 - 1401042
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgat 318  Q
    |||||||||||||||||||| ||||| |||||||||| |||| ||||       ||| ||||  || || || || |||||||||||||||||||||||     
T  1401140 atgaagcatggacactcctcagattaggtgtgtcccgatgtcggaca-------tgtcgtgtcggacaccgatacttataattacactgaattatgtgag 1401048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 5835299 - 5835264
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||||||| ||||||||    
T  5835299 gacacatataattacactgaattatgttattttctc 5835264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 6490833 - 6490786
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacac 266  Q
    |||||||| ||||||||||||||||| | ||||||||||||| |||||    
T  6490833 atgaagcacggacactcctcggattaagcgtgtcccggtgtcggacac 6490786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 9482986 - 9482951
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||| ||||||||||||    
T  9482986 gacacatataattacactgaattgtgtgattttctc 9482951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 270
Target Start/End: Complemental strand, 17852117 - 17852066
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgt 270  Q
    |||||||| |||||||||||| |||| ||||||| ||||||| |||||||||    
T  17852117 atgaagcacggacactcctcgaattaggtgtgtctcggtgtcggacacgtgt 17852066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 286 - 321
Target Start/End: Original strand, 18013078 - 18013113
Alignment:
Q  286 actgacacatataattacactgaattatgtgatttt 321  Q
    |||||||||||||||||||||||||||||| |||||    
T  18013078 actgacacatataattacactgaattatgtaatttt 18013113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 14729820 - 14729770
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtg 269  Q
    |||||| | ||||||||||||||||| | ||||||||||||| ||||||||    
T  14729820 atgaagtacggacactcctcggattaagcgtgtcccggtgtcggacacgtg 14729770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 324
Target Start/End: Complemental strand, 17307944 - 17307910
Alignment:
Q  290 acacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||||||||||||| ||||||||    
T  17307944 acacatataattacactgaattatgttattttctc 17307910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Original strand, 18213040 - 18213074
Alignment:
Q  289 gacacatataattacactgaattatgtgattttct 323  Q
    |||||||||||||||||| ||||||||||||||||    
T  18213040 gacacatataattacactaaattatgtgattttct 18213074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Original strand, 27732246 - 27732280
Alignment:
Q  289 gacacatataattacactgaattatgtgattttct 323  Q
    ||||||||||||||||||||||||||| |||||||    
T  27732246 gacacatataattacactgaattatgtaattttct 27732280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Complemental strand, 39138496 - 39138462
Alignment:
Q  289 gacacatataattacactgaattatgtgattttct 323  Q
    |||| ||||||||||||||||||||||||||||||    
T  39138496 gacatatataattacactgaattatgtgattttct 39138462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 13770810 - 13770757
Alignment:
Q  222 aagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    ||||| |||||||| |||||||| | |||| |||||||| ||||||||||||||    
T  13770810 aagcacggacactcttcggattaggcgtgttccggtgtcggacacgtgttgtgt 13770757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 16341546 - 16341513
Alignment:
Q  291 cacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||| |||||||||||||||||    
T  16341546 cacatataattacacttaattatgtgattttctc 16341513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 26033390 - 26033443
Alignment:
Q  217 caatgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgt 270  Q
    ||||||| || ||||||||||||||||| ||||||| |||| || |||||||||    
T  26033390 caatgaaacacggacactcctcggattaggtgtgtcgcggtatcggacacgtgt 26033443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 29763126 - 29763187
Alignment:
Q  214 gagcaatgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||| |||||||| ||||||||||||||||| | |||||| | |||| ||||||||| ||||    
T  29763126 gagctatgaagcacggacactcctcggattaggcgtgtcctgatgtcggacacgtgtcgtgt 29763187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 296 - 324
Target Start/End: Complemental strand, 2424659 - 2424631
Alignment:
Q  296 ataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||||||||||||||||    
T  2424659 ataattacactgaattatgtgattttctc 2424631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 289 - 321
Target Start/End: Complemental strand, 15902874 - 15902842
Alignment:
Q  289 gacacatataattacactgaattatgtgatttt 321  Q
    |||||||||||||||||| ||||||||||||||    
T  15902874 gacacatataattacactaaattatgtgatttt 15902842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 21930756 - 21930700
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    ||||||||||||| ||| |||||||| |||||| |||| ||| ||||||| ||||||    
T  21930756 atgaagcatggactctcttcggattaggtgtgttccggcgtcggacacgtcttgtgt 21930700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 24339770 - 24339714
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| || |||||||||||||| | ||||||||||||| || |||||| ||||    
T  24339770 atgaagcacgggcactcctcggattaggcgtgtcccggtgtcggatacgtgtcgtgt 24339714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 296 - 324
Target Start/End: Original strand, 29787383 - 29787411
Alignment:
Q  296 ataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||||||||||||||||    
T  29787383 ataattacactgaattatgtgattttctc 29787411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 32308248 - 32308192
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||||| |||||||||||||||  |||||| ||||||| |||| |||| ||||    
T  32308248 atgaagcatgaacactcctcggattagctgtgtctcggtgtcggacatgtgtcgtgt 32308192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 42720881 - 42720929
Alignment:
Q  273 tgttgtgtttgatactgacacatataattacactgaattatgtgatttt 321  Q
    ||||||||  || ||||||||||||||||||| | ||||||||||||||    
T  42720881 tgttgtgtcagacactgacacatataattacatttaattatgtgatttt 42720929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 219 - 321
Target Start/End: Original strand, 40993277 - 40993374
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgat 318  Q
    |||||||||||||||||||||||||| | ||||||||||||| ||||     ||||| ||||  || || ||||||||||||||||||||||||||||||    
T  40993277 atgaagcatggacactcctcggattaggcgtgtcccggtgtcggaca-----tgtgtcgtgtccgacaccgacacatataattacactgaattatgtgat 40993371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 219 - 324
Target Start/End: Original strand, 8789490 - 8789592
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgat 318  Q
    |||||||| ||||||||||||||||| | ||||| ||||||| |||| ||||   || ||||  || || ||||||||||||||||| ||||||||||||    
T  8789490 atgaagcacggacactcctcggattaggcgtgtctcggtgtccgacatgtgt---gtcgtgtccgacaccgacacatataattacacggaattatgtgat 8789586  T
Q  319 tttctc 324  Q
    ||||||    
T  8789587 tttctc 8789592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 258
Target Start/End: Original strand, 3730110 - 3730149
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtg 258  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  3730110 atgaagcatggacactcctcggattaggtgtgtcccggtg 3730149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 324
Target Start/End: Original strand, 49505158 - 49505196
Alignment:
Q  286 actgacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  49505158 actgacacatataattacactaaattatgtgattttctc 49505196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 4987221 - 4987278
Alignment:
Q  218 aatgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    ||||||| | ||||||||||||||||| | ||||||||||||| ||||||||| ||||    
T  4987221 aatgaagtacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgt 4987278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 324
Target Start/End: Complemental strand, 25093572 - 25093519
Alignment:
Q  271 tgtgttgtgtttgatactgacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||  || || ||||||||||||||||||||||| ||||||||||||    
T  25093572 tgtgttgtgtccgacaccgacacatataattacactgaattgtgtgattttctc 25093519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 321
Target Start/End: Complemental strand, 7928502 - 7928470
Alignment:
Q  289 gacacatataattacactgaattatgtgatttt 321  Q
    |||||||||||||||||||||||||||||||||    
T  7928502 gacacatataattacactgaattatgtgatttt 7928470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 10690264 - 10690304
Alignment:
Q  284 atactgacacatataattacactgaattatgtgattttctc 324  Q
    |||| |||| |||||||||||||||||||||||||||||||    
T  10690264 ataccgacaaatataattacactgaattatgtgattttctc 10690304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 16789582 - 16789634
Alignment:
Q  214 gagcaatgaagcatggacactcctcggattatgtgtgtcccggtgtctgacac 266  Q
    |||| ||||||||||||||||||| |||||| |||||||||| |||| |||||    
T  16789582 gagctatgaagcatggacactcctaggattaggtgtgtcccgttgtcggacac 16789634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 20503582 - 20503526
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| ||||||||||||||||| | ||||||||||||| |||| |||| ||||    
T  20503582 atgaagcacggacactcctcggattaggcgtgtcccggtgtcagacatgtgtcgtgt 20503526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 27505368 - 27505312
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| ||||||||||||||||| |  |||||||||||| ||||||||| ||||    
T  27505368 atgaagcacggacactcctcggattaggcatgtcccggtgtcggacacgtgtcgtgt 27505312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 323
Target Start/End: Complemental strand, 35223055 - 35222956
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgat 318  Q
    |||||||| ||||||||||||||| | | ||||||| ||||| |||||||||  |||       || || |||||||||||||||| |||||||||||||    
T  35223055 atgaagcacggacactcctcggataaagcgtgtccccgtgtcagacacgtgtcatgtcc-----gacaccgacacatataattacattgaattatgtgat 35222961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 55401192 - 55401136
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| ||||||||||||||||| | ||||| ||||||| ||||||||| ||||    
T  55401192 atgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtcgtgt 55401136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 293 - 324
Target Start/End: Original strand, 11493372 - 11493403
Alignment:
Q  293 catataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||||||||||||    
T  11493372 catataattacactgaattatgtgattttctc 11493403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 283 - 322
Target Start/End: Original strand, 11507476 - 11507515
Alignment:
Q  283 gatactgacacatataattacactgaattatgtgattttc 322  Q
    ||||| || |||||||||||||||||||||||||||||||    
T  11507476 gataccgaaacatataattacactgaattatgtgattttc 11507515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 321
Target Start/End: Original strand, 15999952 - 16000055
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt-tgtgtttgatactgacacatataattacactgaattatgtga 317  Q
    |||| ||| |||||||||| |||||| | ||||||||||||| ||||||||| ||||  ||||  || || ||||| | || |||||||||||||||| |    
T  15999952 atgatgcacggacactccttggattaggcgtgtcccggtgtcggacacgtgtcgtgtacgtgtccgacaccgacacttgtagttacactgaattatgtta 16000051  T
Q  318 tttt 321  Q
    ||||    
T  16000052 tttt 16000055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 32804547 - 32804582
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||||| |||||||||||||||||    
T  32804547 gacacatataattacactaaattatgtgattttctc 32804582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 266
Target Start/End: Original strand, 34185054 - 34185101
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacac 266  Q
    |||||||| ||||||||||||||||| | ||||||||||||| |||||    
T  34185054 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 34185101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 48202264 - 48202311
Alignment:
Q  277 gtgtttgatactgacacatataattacactgaattatgtgattttctc 324  Q
    |||||||| || |||||||||||||||| | |||||||||||||||||    
T  48202264 gtgtttgacacagacacatataattacattaaattatgtgattttctc 48202311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 324
Target Start/End: Complemental strand, 11252093 - 11251995
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgat 318  Q
    ||||||||  |||||||||||||||| | |||| ||| || | ||||||||||||||      ||| || ||||||||  ||||||||||||||||||||    
T  11252093 atgaagcacagacactcctcggattaggcgtgttccgatgccggacacgtgttgtgtc-----tgacaccgacacata--attacactgaattatgtgat 11252001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 11313808 - 11313842
Alignment:
Q  290 acacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||| |||||||||||||||||    
T  11313808 acacatataattacactaaattatgtgattttctc 11313842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 16192758 - 16192792
Alignment:
Q  290 acacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||||||||||||| ||||||||    
T  16192758 acacatataattacactgaattatgttattttctc 16192792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Complemental strand, 2731863 - 2731830
Alignment:
Q  290 acacatataattacactgaattatgtgattttct 323  Q
    ||||||||||||||||| ||||||||||||||||    
T  2731863 acacatataattacacttaattatgtgattttct 2731830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 25074912 - 25074859
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttg 272  Q
    |||||||| | ||||||||||||||| ||||||||| ||||| |||||| ||||    
T  25074912 atgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgcgttg 25074859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 40052429 - 40052380
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgt 268  Q
    |||||||| | ||||||||||||||| | ||||||||||||| |||||||    
T  40052429 atgaagcacgaacactcctcggattaggcgtgtcccggtgtcggacacgt 40052380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 49651718 - 49651759
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtc 260  Q
    |||||||| ||||||| ||||||||| |||||||||||||||    
T  49651718 atgaagcacggacacttctcggattaggtgtgtcccggtgtc 49651759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 292 - 324
Target Start/End: Complemental strand, 1438853 - 1438821
Alignment:
Q  292 acatataattacactgaattatgtgattttctc 324  Q
    ||||||||||| |||||||||||||||||||||    
T  1438853 acatataattatactgaattatgtgattttctc 1438821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 3163973 - 3164021
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacg 267  Q
    ||||||||||||||||||||| |||| | ||||| ||||||| ||||||    
T  3163973 atgaagcatggacactcctcgaattaggcgtgtctcggtgtcggacacg 3164021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 292 - 324
Target Start/End: Complemental strand, 12704056 - 12704024
Alignment:
Q  292 acatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||||| |||||||    
T  12704056 acatataattacactgaattatgtgcttttctc 12704024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 295 - 323
Target Start/End: Original strand, 14840304 - 14840332
Alignment:
Q  295 tataattacactgaattatgtgattttct 323  Q
    |||||||||||||||||||||||||||||    
T  14840304 tataattacactgaattatgtgattttct 14840332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 20691384 - 20691336
Alignment:
Q  276 tgtgtttgatactgacacatataattacactgaattatgtgattttctc 324  Q
    ||||| ||| || ||||||||| ||||||||||||||||| ||||||||    
T  20691384 tgtgtctgacaccgacacatatgattacactgaattatgtcattttctc 20691336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 25775628 - 25775576
Alignment:
Q  215 agcaatgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacg 267  Q
    |||||||||||| | ||||||||||||||| | |||||| |||||| ||||||    
T  25775628 agcaatgaagcacgaacactcctcggattaggcgtgtcctggtgtcggacacg 25775576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 289 - 321
Target Start/End: Complemental strand, 29508496 - 29508464
Alignment:
Q  289 gacacatataattacactgaattatgtgatttt 321  Q
    ||||||||||||||||||||||||| |||||||    
T  29508496 gacacatataattacactgaattatatgatttt 29508464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 289 - 321
Target Start/End: Complemental strand, 38731270 - 38731238
Alignment:
Q  289 gacacatataattacactgaattatgtgatttt 321  Q
    ||||||||||| |||||||||||||||||||||    
T  38731270 gacacatataactacactgaattatgtgatttt 38731238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 52369904 - 52369864
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgt 259  Q
    |||||||| |||||||||||||| || ||||||||||||||    
T  52369904 atgaagcacggacactcctcggaataggtgtgtcccggtgt 52369864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 219 - 321
Target Start/End: Original strand, 8776910 - 8777012
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgat 318  Q
    |||||||| ||||||||||||||||| ||||||| ||||||| ||||||||| |||| ||||  || ||  |||| | ||||||||||||||| ||||||    
T  8776910 atgaagcacggacactcctcggattaggtgtgtctcggtgtcggacacgtgtcgtgtcgtgtccgacaccaacacttgtaattacactgaattttgtgat 8777009  T
Q  319 ttt 321  Q
    |||    
T  8777010 ttt 8777012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 321
Target Start/End: Complemental strand, 34595251 - 34595154
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgat 318  Q
    |||||||| ||||||||||||||||| ||||||||||||||| |||||     |||| ||||  || || ||||| | ||||||||||||||||||||||    
T  34595251 atgaagcacggacactcctcggattaggtgtgtcccggtgtcagacac-----gtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgat 34595157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 219 - 324
Target Start/End: Original strand, 17327592 - 17327697
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgat 318  Q
    |||||||| ||||||||||||||||| | ||||||| ||||| ||||||||| ||||       || ||||||||||||| ||||||| |||||||||||    
T  17327592 atgaagcacggacactcctcggattaggcgtgtccctgtgtcagacacgtgtcgtgtccgacacgacactgacacatatagttacactaaattatgtgat 17327691  T
Q  319 tttctc 324  Q
    ||||||    
T  17327692 tttctc 17327697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 7265600 - 7265635
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  7265600 gacacatataattacactgaattatgtgattttctc 7265635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 9025501 - 9025536
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  9025501 gacacatataattacactgaattatgtgattttctc 9025536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 11591877 - 11591912
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  11591877 gacacatataattacactgaattatgtgattttctc 11591912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 324
Target Start/End: Original strand, 13360363 - 13360414
Alignment:
Q  273 tgttgtgtttgatactgacacatataattacactgaattatgtgattttctc 324  Q
    |||||||| ||| || || |||||||||||||||||||||||||||||||||    
T  13360363 tgttgtgtctgacaccgaaacatataattacactgaattatgtgattttctc 13360414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 19040404 - 19040369
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  19040404 gacacatataattacactgaattatgtgattttctc 19040369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 26562741 - 26562706
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  26562741 gacacatataattacactgaattatgtgattttctc 26562706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 31959267 - 31959220
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacac 266  Q
    |||||||| ||||||||||||||||| ||||||||||||||| |||||    
T  31959267 atgaagcacggacactcctcggattaggtgtgtcccggtgtcggacac 31959220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 8101155 - 8101105
Alignment:
Q  271 tgtgttgtgtttgatactgacacatataattacactgaattatgtgatttt 321  Q
    |||||||| ||||| |||||||||||||||||||||| ||||| |||||||    
T  8101155 tgtgttgtatttgacactgacacatataattacactggattatatgatttt 8101105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 266
Target Start/End: Original strand, 8389411 - 8389457
Alignment:
Q  220 tgaagcatggacactcctcggattatgtgtgtcccggtgtctgacac 266  Q
    ||||||| ||||||||||||||||| ||||||||||||||| |||||    
T  8389411 tgaagcacggacactcctcggattaggtgtgtcccggtgtcggacac 8389457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 321
Target Start/End: Complemental strand, 7027294 - 7027262
Alignment:
Q  289 gacacatataattacactgaattatgtgatttt 321  Q
    |||||||||||||||||||||||||||||||||    
T  7027294 gacacatataattacactgaattatgtgatttt 7027262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 9107301 - 9107357
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| || |||||||||||||| ||||||||||||||| |||||  |||||||    
T  9107301 atgaagcacgggcactcctcggattaggtgtgtcccggtgtcggacacacgttgtgt 9107357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 16766825 - 16766769
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| ||||| || |||||||| | ||||||||||||| ||||||||||||||    
T  16766825 atgaagcacggacattcttcggattaggcgtgtcccggtgtcggacacgtgttgtgt 16766769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 7086847 - 7086812
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||||| |||||||||||||||||    
T  7086847 gacacatataattacactaaattatgtgattttctc 7086812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 7378031 - 7377996
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||| |||||||||||||||||||    
T  7378031 gacacatataattacattgaattatgtgattttctc 7377996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 9617486 - 9617451
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||| |||||||||||||||||||    
T  9617486 gacacatataattacattgaattatgtgattttctc 9617451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 9629435 - 9629400
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||| |||||||||||||||||||    
T  9629435 gacacatataattacattgaattatgtgattttctc 9629400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 286 - 324
Target Start/End: Original strand, 10339129 - 10339168
Alignment:
Q  286 actgacacatataatta-cactgaattatgtgattttctc 324  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  10339129 actgacacatataattaacactgaattatgtgattttctc 10339168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 30866151 - 30866186
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||| |||||||||||||||||||    
T  30866151 gacacatataattacattgaattatgtgattttctc 30866186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Complemental strand, 9658931 - 9658897
Alignment:
Q  289 gacacatataattacactgaattatgtgattttct 323  Q
    |||| ||||||||||||||||||||||||||||||    
T  9658931 gacaaatataattacactgaattatgtgattttct 9658897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 321
Target Start/End: Complemental strand, 12696446 - 12696344
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgat 318  Q
    ||||||||  ||||||||| |||| | ||||||||||||||| ||||||||| ||||       || |||||||| | ||||||||||||||||||| ||    
T  12696446 atgaagcacagacactccttggataaggtgtgtcccggtgtcagacacgtgtcgtgtccgacacgacactgacacttgtaattacactgaattatgtaat 12696347  T
Q  319 ttt 321  Q
    |||    
T  12696346 ttt 12696344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 321
Target Start/End: Original strand, 17341669 - 17341703
Alignment:
Q  287 ctgacacatataattacactgaattatgtgatttt 321  Q
    ||||||| |||||||||||||||||||||||||||    
T  17341669 ctgacacttataattacactgaattatgtgatttt 17341703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 321
Target Start/End: Complemental strand, 28152215 - 28152118
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgat 318  Q
    |||||||| | ||||||||||||||| |  |||||||||||| |||||     |||| ||||  || || ||||| | ||||||||||||||||||||||    
T  28152215 atgaagcacgaacactcctcggattaggcctgtcccggtgtcggacac-----gtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgat 28152121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 323
Target Start/End: Complemental strand, 4388140 - 4388103
Alignment:
Q  286 actgacacatataattacactgaattatgtgattttct 323  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  4388140 actgacacatataattaccctggattatgtgattttct 4388103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 30781235 - 30781276
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtc 260  Q
    |||||||| | ||||||||||||||| |||||||||||||||    
T  30781235 atgaagcacgaacactcctcggattaagtgtgtcccggtgtc 30781276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Original strand, 32511674 - 32511707
Alignment:
Q  290 acacatataattacactgaattatgtgattttct 323  Q
    |||| |||||||||||||||||||||||||||||    
T  32511674 acacttataattacactgaattatgtgattttct 32511707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 7248486 - 7248430
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| ||||||||||||||||    ||||||||||||| ||||| ||||||||    
T  7248486 atgaagcacggacactcctcggatttgacgtgtcccggtgtcggacacatgttgtgt 7248430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 286 - 322
Target Start/End: Complemental strand, 7740696 - 7740660
Alignment:
Q  286 actgacacatataattacactgaattatgtgattttc 322  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  7740696 actgacacatataattacactcaattttgtgattttc 7740660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 8365450 - 8365506
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| ||| ||||||||||||| | ||||||| ||||| ||||||||| ||||    
T  8365450 atgaagcacggagactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgt 8365506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 9629511 - 9629455
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    ||||||||||||||||||||||||||   ||||| | ||||| ||||| ||||||||    
T  9629511 atgaagcatggacactcctcggattagacgtgtctcagtgtcggacacatgttgtgt 9629455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 289 - 321
Target Start/End: Original strand, 12627584 - 12627616
Alignment:
Q  289 gacacatataattacactgaattatgtgatttt 321  Q
    ||||||||| |||||||||||||||||||||||    
T  12627584 gacacatattattacactgaattatgtgatttt 12627616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 31385047 - 31384991
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| |||||||||| |||||| | ||||||||||||  ||||||||| ||||    
T  31385047 atgaagcacggacactccttggattaggcgtgtcccggtgtaggacacgtgtcgtgt 31384991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 296 - 324
Target Start/End: Original strand, 31579239 - 31579267
Alignment:
Q  296 ataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||||||||||||||||    
T  31579239 ataattacactgaattatgtgattttctc 31579267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 324
Target Start/End: Original strand, 20679336 - 20679437
Alignment:
Q  218 aatgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtga 317  Q
    ||||||||||||||||||||||| | | | ||||||||||||| ||||||||||| ||      ||| || ||||| ||||||||||||||| |||||||    
T  20679336 aatgaagcatggacactcctcggttaaggcgtgtcccggtgtcggacacgtgttgcgtc-----tgacaccgacacttataattacactgaactatgtga 20679430  T
Q  318 ttttctc 324  Q
    |||||||    
T  20679431 ttttctc 20679437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 324
Target Start/End: Complemental strand, 3025668 - 3025568
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgat 318  Q
    |||||||| |||||||||||||||||   ||||| | ||||| ||||||||| ||||       || |||||||| ||||||||||||||||||||||||    
T  3025668 atgaagcacggacactcctcggattagccgtgtcacagtgtcagacacgtgtcgtgtcc-----gacactgacacctataattacactgaattatgtgat 3025574  T
Q  319 tttctc 324  Q
    ||||||    
T  3025573 tttctc 3025568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 324
Target Start/End: Complemental strand, 14134816 - 14134716
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgat 318  Q
    ||||| || |||||||||||| |||| | |||||| |||| | ||||||||| |||||     ||| || |||| |||||||||||||||||||||||||    
T  14134816 atgaaacacggacactcctcgaattaggcgtgtcctggtgacggacacgtgtcgtgtt-----tgacaccgacatatataattacactgaattatgtgat 14134722  T
Q  319 tttctc 324  Q
    ||||||    
T  14134721 tttctc 14134716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 29510235 - 29510283
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacg 267  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||||    
T  29510235 atgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacg 29510283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 34897137 - 34897102
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  34897137 gacacatataattacactgaattatgtgattttctc 34897102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 323
Target Start/End: Original strand, 4786345 - 4786379
Alignment:
Q  289 gacacatataattacactgaattatgtgattttct 323  Q
    |||||||||||||||||||||||||||||||||||    
T  4786345 gacacatataattacactgaattatgtgattttct 4786379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 323
Target Start/End: Original strand, 26902182 - 26902216
Alignment:
Q  289 gacacatataattacactgaattatgtgattttct 323  Q
    |||||||||||||||||||||||||||||||||||    
T  26902182 gacacatataattacactgaattatgtgattttct 26902216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 323
Target Start/End: Complemental strand, 11803310 - 11803277
Alignment:
Q  290 acacatataattacactgaattatgtgattttct 323  Q
    ||||||||||||||||||||||||||||||||||    
T  11803310 acacatataattacactgaattatgtgattttct 11803277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 318
Target Start/End: Complemental strand, 8293931 - 8293848
Alignment:
Q  230 acactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgat 318  Q
    ||||||||||||||| |||||||| |||||| || |     |||||  ||||||| || |||||||||||||||||||||||| |||||    
T  8293931 acactcctcggattaggtgtgtccaggtgtcagata-----tgtgtcatgtttgacaccgacacatataattacactgaattacgtgat 8293848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 321
Target Start/End: Original strand, 11927093 - 11927125
Alignment:
Q  289 gacacatataattacactgaattatgtgatttt 321  Q
    |||||||||||||||||||||||||||||||||    
T  11927093 gacacatataattacactgaattatgtgatttt 11927125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 24362208 - 24362244
Alignment:
Q  288 tgacacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||||||||||||||||||| ||||    
T  24362208 tgacacatataattacactgaattatgtgattctctc 24362244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 38487159 - 38487207
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacg 267  Q
    ||||||||  ||||||||||||||||||||||||| |||||| ||||||    
T  38487159 atgaagcacagacactcctcggattatgtgtgtccgggtgtcggacacg 38487207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 320
Target Start/End: Complemental strand, 8847308 - 8847277
Alignment:
Q  289 gacacatataattacactgaattatgtgattt 320  Q
    ||||||||||||||||||||||||||||||||    
T  8847308 gacacatataattacactgaattatgtgattt 8847277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 13844603 - 13844638
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||||| |||||||||||||||||    
T  13844603 gacacatataattacactcaattatgtgattttctc 13844638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 31236584 - 31236619
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||| |||||||||||||||||||    
T  31236584 gacacatataattacattgaattatgtgattttctc 31236619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 324
Target Start/End: Complemental strand, 14731763 - 14731729
Alignment:
Q  290 acacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||| |||||||||||||||||    
T  14731763 acacatataattacactaaattatgtgattttctc 14731729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Complemental strand, 18964229 - 18964195
Alignment:
Q  289 gacacatataattacactgaattatgtgattttct 323  Q
    |||||||||||||||| ||||||||||||||||||    
T  18964229 gacacatataattacattgaattatgtgattttct 18964195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 22943301 - 22943347
Alignment:
Q  229 gacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||||||||||| | ||||||||||||| ||||||||| ||||    
T  22943301 gacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgt 22943347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Complemental strand, 27213599 - 27213565
Alignment:
Q  289 gacacatataattacactgaattatgtgattttct 323  Q
    |||||||||||||||| ||||||||||||||||||    
T  27213599 gacacatataattacagtgaattatgtgattttct 27213565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 321
Target Start/End: Complemental strand, 8343444 - 8343336
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt------tgtgtttgatactgacacatataattacactgaatta 312  Q
    ||||||||  ||||||| |||||||| | ||||||||||||| ||||||||| ||||       ||||  || |||||||| | |||||||||| |||||    
T  8343444 atgaagcacagacactcttcggattaggcgtgtcccggtgtcggacacgtgtcgtgtcggacacgtgtacgacactgacacttgtaattacactaaatta 8343345  T
Q  313 tgtgatttt 321  Q
    |||||||||    
T  8343344 tgtgatttt 8343336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 321
Target Start/End: Complemental strand, 34223004 - 34222967
Alignment:
Q  284 atactgacacatataattacactgaattatgtgatttt 321  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  34223004 ataccgacacatataattacacttaattatgtgatttt 34222967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 39954288 - 39954321
Alignment:
Q  291 cacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||| |||||||||||||||||    
T  39954288 cacatataattacactaaattatgtgattttctc 39954321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 926729 - 926781
Alignment:
Q  218 aatgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgt 270  Q
    ||||||||| ||||||||||||||| | |  |||||||||||| |||||||||    
T  926729 aatgaagcacggacactcctcggataaagcatgtcccggtgtcggacacgtgt 926781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 292 - 324
Target Start/End: Complemental strand, 4611583 - 4611551
Alignment:
Q  292 acatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||||||||||| ||||||||    
T  4611583 acatataattacactgaattatgttattttctc 4611551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 289 - 321
Target Start/End: Complemental strand, 11944717 - 11944685
Alignment:
Q  289 gacacatataattacactgaattatgtgatttt 321  Q
    |||||||||||||||||||| ||||||||||||    
T  11944717 gacacatataattacactgagttatgtgatttt 11944685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 16641911 - 16641951
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgt 259  Q
    ||||||||  |||||||||||||||| ||||||||||||||    
T  16641911 atgaagcacagacactcctcggattaggtgtgtcccggtgt 16641951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 16988030 - 16987990
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgt 259  Q
    |||||||| ||||||||||||||||| | ||||||||||||    
T  16988030 atgaagcacggacactcctcggattaggggtgtcccggtgt 16987990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 22652104 - 22652048
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| |||||||||||||||||   ||||||||||||| ||||| ||| ||||    
T  22652104 atgaagcacggacactcctcggattagacgtgtcccggtgtcggacacatgtcgtgt 22652048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 296 - 324
Target Start/End: Original strand, 37283824 - 37283852
Alignment:
Q  296 ataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||||||||||||||||    
T  37283824 ataattacactgaattatgtgattttctc 37283852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 324
Target Start/End: Complemental strand, 36635447 - 36635341
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt-tgtgtttgatactgacacatataattacactgaattatgtga 317  Q
    |||||||| |||||||| |||||||| | ||||||||||||||||| ||||| |||| ||    | | ||  ||||||||||||||||||||||||||||    
T  36635447 atgaagcacggacactcttcggattaggcgtgtcccggtgtctgacgcgtgtcgtgtctgacactcacacgaacacatataattacactgaattatgtga 36635348  T
Q  318 ttttctc 324  Q
    |||||||    
T  36635347 ttttctc 36635341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 321
Target Start/End: Original strand, 3947703 - 3947805
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgat 318  Q
    |||||||| ||||||||||||||||| |||||||| |||||| ||||||||| ||||       || |||||||| | |||||||||||||||||| |||    
T  3947703 atgaagcacggacactcctcggattaggtgtgtcctggtgtcggacacgtgtcgtgtccgacacgacactgacacttgtaattacactgaattatgcgat 3947802  T
Q  319 ttt 321  Q
    |||    
T  3947803 ttt 3947805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 903980 - 903939
Alignment:
Q  283 gatactgacacatataattacactgaattatgtgattttctc 324  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  903980 gatactgatacatataattacactgaattatgtgattttctc 903939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 23292928 - 23292984
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| ||||||||||||||||| | ||||||||||||| ||||||||| ||||    
T  23292928 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgt 23292984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 40613502 - 40613467
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  40613502 gacacatataattacactgaattatgtgattttctc 40613467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 324
Target Start/End: Original strand, 10499274 - 10499312
Alignment:
Q  286 actgacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  10499274 actgacacatataattacactaaattatgtgattttctc 10499312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 321
Target Start/End: Original strand, 28964190 - 28964287
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgat 318  Q
    |||||||||||||||||||||||||| | ||||||| ||||| || |     ||||| ||||  || || ||||| | ||||||||||||||||||||||    
T  28964190 atgaagcatggacactcctcggattaggcgtgtcccagtgtcggata-----tgtgtcgtgtccgacacagacacttgtaattacactgaattatgtgat 28964284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 22440609 - 22440642
Alignment:
Q  291 cacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||||||||||||||    
T  22440609 cacatataattacactgaattatgtgattttctc 22440642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 25950474 - 25950515
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtc 260  Q
    |||||||||||||||||||||||||| ||||||| |||||||    
T  25950474 atgaagcatggacactcctcggattaggtgtgtctcggtgtc 25950515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 40784070 - 40784029
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtc 260  Q
    |||||||| ||||||||||||||||| |||||||||||||||    
T  40784070 atgaagcacggacactcctcggattaggtgtgtcccggtgtc 40784029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 53381532 - 53381573
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtc 260  Q
    |||||||| ||||||||||||||||| |||||||||||||||    
T  53381532 atgaagcacggacactcctcggattaggtgtgtcccggtgtc 53381573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 8402732 - 8402784
Alignment:
Q  272 gtgttgtgtttgatactgacacatataattacactgaattatgtgattttctc 324  Q
    |||| |||| ||| ||||| |||||||||||||||||||||| ||||||||||    
T  8402732 gtgtcgtgtctgacactgagacatataattacactgaattatatgattttctc 8402784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 19482796 - 19482740
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| | ||||||||||||||| ||||||||| ||||| ||||||||| ||||    
T  19482796 atgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgtgtcgtgt 19482740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 323
Target Start/End: Complemental strand, 35161153 - 35161054
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgat 318  Q
    |||||||| |||||||  |||||||| |||||| |||||||| ||||||||| ||||       ||  |||| || ||||||||||||||||||||||||    
T  35161153 atgaagcacggacacttttcggattaggtgtgttccggtgtcggacacgtgtcgtgtcc-----gactctgatacttataattacactgaattatgtgat 35161059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 5775365 - 5775400
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||||| |||||||||||||||||    
T  5775365 gacacatataattacacttaattatgtgattttctc 5775400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 16189761 - 16189726
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    |||||| |||||||||||||||||||||||||||||    
T  16189761 gacacacataattacactgaattatgtgattttctc 16189726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 321
Target Start/End: Complemental strand, 49431140 - 49431046
Alignment:
Q  222 aagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgatttt 321  Q
    ||||||||||||||||||||| | | ||||||||||||  |||||     |||| ||||  || || ||||| | |||||||||||||||||||||||||    
T  49431140 aagcatggacactcctcggataaggcgtgtcccggtgttggacac-----gtgtcgtgtccgacaccgacacttttaattacactgaattatgtgatttt 49431046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Complemental strand, 13134502 - 13134468
Alignment:
Q  289 gacacatataattacactgaattatgtgattttct 323  Q
    |||||||||||||||||| ||||||||||||||||    
T  13134502 gacacatataattacactaaattatgtgattttct 13134468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 18576045 - 18576079
Alignment:
Q  290 acacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||| ||||||||||||||||||    
T  18576045 acacatataattacaccgaattatgtgattttctc 18576079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 28084640 - 28084590
Alignment:
Q  220 tgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgt 270  Q
    ||||||| ||||||||||||||||| | ||||||| ||||| |||||||||    
T  28084640 tgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgt 28084590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 324
Target Start/End: Original strand, 8423731 - 8423760
Alignment:
Q  295 tataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||||||||||    
T  8423731 tataattacactgaattatgtgattttctc 8423760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 715547 - 715603
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| ||||||||||||||||| | ||||||| ||||| |||| |||| ||||    
T  715547 atgaagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgt 715603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 752873 - 752929
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| ||||||||||||||||| | ||||||| ||||| |||| |||| ||||    
T  752873 atgaagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgt 752929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 292 - 324
Target Start/End: Complemental strand, 7970568 - 7970536
Alignment:
Q  292 acatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||||||||| ||||||||||    
T  7970568 acatataattacactgaattatatgattttctc 7970536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 292 - 324
Target Start/End: Complemental strand, 9996889 - 9996857
Alignment:
Q  292 acatataattacactgaattatgtgattttctc 324  Q
    ||||||||||| |||||||||||||||||||||    
T  9996889 acatataattatactgaattatgtgattttctc 9996857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 318
Target Start/End: Complemental strand, 15029816 - 15029788
Alignment:
Q  290 acacatataattacactgaattatgtgat 318  Q
    |||||||||||||||||||||||||||||    
T  15029816 acacatataattacactgaattatgtgat 15029788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 289 - 321
Target Start/End: Original strand, 22234897 - 22234929
Alignment:
Q  289 gacacatataattacactgaattatgtgatttt 321  Q
    |||||||| ||||||||||||||||||||||||    
T  22234897 gacacatagaattacactgaattatgtgatttt 22234929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 30982809 - 30982865
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| |||||||| | |||||| | ||||||||||||| ||||||||| ||||    
T  30982809 atgaagcacggacactctttggattaggcgtgtcccggtgtcggacacgtgtcgtgt 30982865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 293 - 321
Target Start/End: Original strand, 40179647 - 40179675
Alignment:
Q  293 catataattacactgaattatgtgatttt 321  Q
    |||||||||||||||||||||||||||||    
T  40179647 catataattacactgaattatgtgatttt 40179675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 289 - 321
Target Start/End: Original strand, 54580030 - 54580062
Alignment:
Q  289 gacacatataattacactgaattatgtgatttt 321  Q
    ||||| |||||||||||||||||||||||||||    
T  54580030 gacacttataattacactgaattatgtgatttt 54580062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 219 - 324
Target Start/End: Complemental strand, 14873639 - 14873534
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgat 318  Q
    |||||||| ||||||||||||||||| | ||||||||||||  ||||||||||| ||      ||| || |||||||||||||||||| ||||||||| |    
T  14873639 atgaagcacggacactcctcggattaggcgtgtcccggtgttggacacgtgttgcgtccgacatgacaccgacacatataattacactaaattatgtgct 14873540  T
Q  319 tttctc 324  Q
    ||||||    
T  14873539 tttctc 14873534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 321
Target Start/End: Original strand, 21190997 - 21191095
Alignment:
Q  218 aatgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtga 317  Q
    ||||||||| ||||||||||||||||| | ||||||||| ||| ||||||||||||||       || || ||||| | |||||||||||||||||||||    
T  21190997 aatgaagcacggacactcctcggattaggcgtgtcccggagtcggacacgtgttgtgtcc-----gacaccgacacttgtaattacactgaattatgtga 21191091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 324
Target Start/End: Original strand, 28588616 - 28588716
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgat 318  Q
    ||||||||||||||||| |||||||| | |||||| |||||| || |     ||||| ||||  || || ||||| ||||||||||||||||||||||||    
T  28588616 atgaagcatggacactcttcggattaagcgtgtcctggtgtcagata-----tgtgtcgtgtccgacaccgacacctataattacactgaattatgtgat 28588710  T
Q  319 tttctc 324  Q
    ||||||    
T  28588711 tttctc 28588716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 30098454 - 30098398
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| ||||| ||||||||||| |||||||| |||||||||||||||| ||||    
T  30098454 atgaagcacggacattcctcggattaggtgtgtcctggtgtctgacacgtgtcgtgt 30098398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 284 - 323
Target Start/End: Complemental strand, 39758329 - 39758290
Alignment:
Q  284 atactgacacatataattacactgaattatgtgattttct 323  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  39758329 ataccgacacatataattacactgaattatgtgattttct 39758290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 41091264 - 41091299
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  41091264 gacacatataattacactgaattatgtgattttctc 41091299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 6471897 - 6471931
Alignment:
Q  290 acacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||||||||||||||||||||||    
T  6471897 acacatataattacactgaattatgtgattttctc 6471931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 321
Target Start/End: Complemental strand, 42893477 - 42893380
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgat 318  Q
    ||||||||||||||||||||  |||| | |||||| |||||| ||||||||||||||      ||| || ||||| | ||||||||||| ||||||||||    
T  42893477 atgaagcatggacactcctcatattaggcgtgtcctggtgtcggacacgtgttgtgtc-----tgacaccgacacttgtaattacactggattatgtgat 42893383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 275
Target Start/End: Complemental strand, 43001924 - 43001866
Alignment:
Q  217 caatgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||||| ||||||||||||||||| | |||||| ||||| |||||||||| ||||    
T  43001924 caatgaagcacggacactcctcggattaggcgtgtccaggtgtttgacacgtgtcgtgt 43001866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 24273039 - 24273072
Alignment:
Q  291 cacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||||||||||||||    
T  24273039 cacatataattacactgaattatgtgattttctc 24273072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 24389175 - 24389142
Alignment:
Q  291 cacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||||||||||||||    
T  24389175 cacatataattacactgaattatgtgattttctc 24389142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 21576687 - 21576743
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| ||||||||||||||||| | ||||||| ||||| ||||||||| ||||    
T  21576687 atgaagcacggacactcctcggattaggcgtgtcccagtgtcagacacgtgtcgtgt 21576743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 3966555 - 3966520
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||| ||||||||||||    
T  3966555 gacacatataattacactgaattgtgtgattttctc 3966520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 18421848 - 18421883
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||| ||||||||||||||||    
T  18421848 gacacatataattacactggattatgtgattttctc 18421883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 23015996 - 23016031
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    ||||| ||||||||||||||||||||||||||||||    
T  23015996 gacacctataattacactgaattatgtgattttctc 23016031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 30502395 - 30502430
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||||||||||| |||||||||||    
T  30502395 gacacatataattacactgaattaagtgattttctc 30502430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 30542738 - 30542773
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||||||||||| |||||||||||    
T  30542738 gacacatataattacactgaattaagtgattttctc 30542773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 265
Target Start/End: Original strand, 38464315 - 38464361
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgaca 265  Q
    ||||||||  |||||||||||||||| ||||||||||||||| ||||    
T  38464315 atgaagcacagacactcctcggattaggtgtgtcccggtgtcggaca 38464361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 17088399 - 17088358
Alignment:
Q  228 ggacactcctcggattatgtgtgtcccggtgtctgacacgtg 269  Q
    ||||||||||||||||| | ||||||||||||| ||||||||    
T  17088399 ggacactcctcggattaggcgtgtcccggtgtcggacacgtg 17088358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 275
Target Start/End: Original strand, 21194068 - 21194121
Alignment:
Q  222 aagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    ||||| ||||||||||||||||| | ||| |||||||||||||| |||| ||||    
T  21194068 aagcacggacactcctcggattaggcgtgccccggtgtctgacatgtgtcgtgt 21194121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 2419984 - 2419936
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacg 267  Q
    |||||||| |||||||| |||||||| ||||||||||| ||| ||||||    
T  2419984 atgaagcacggacactcatcggattaggtgtgtcccggggtcggacacg 2419936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 289 - 321
Target Start/End: Original strand, 5467985 - 5468017
Alignment:
Q  289 gacacatataattacactgaattatgtgatttt 321  Q
    ||||| |||||||||||||||||||||||||||    
T  5467985 gacacctataattacactgaattatgtgatttt 5468017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 12264835 - 12264871
Alignment:
Q  288 tgacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  12264835 tgacacatataattacactgaatcatgtaattttctc 12264871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 321
Target Start/End: Original strand, 2438660 - 2438758
Alignment:
Q  218 aatgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtga 317  Q
    ||||||||| ||||||||||||||||| | ||||||||||||| ||||     ||||| ||||  || || ||||| | |||||||||||||||||||||    
T  2438660 aatgaagcacggacactcctcggattaggcgtgtcccggtgtcggaca-----tgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtga 2438754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 321
Target Start/End: Original strand, 18840955 - 18841052
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgat 318  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||     ||||| |||| ||| || ||||| | |||||||||| |||||||| ||    
T  18840955 atgaagcacggacactcctcggattaggtgtgtcccggtgtcggaca-----tgtgtcgtgtctgacaccgacacttgtaattacacttaattatgtaat 18841049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 19942383 - 19942335
Alignment:
Q  218 aatgaagcatggacactcctcggattatgtgtgtcccggtgtctgacac 266  Q
    ||||||||||||||||||||||||||| | ||||||||||||| |||||    
T  19942383 aatgaagcatggacactcctcggattaggcgtgtcccggtgtcagacac 19942335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 38117101 - 38117157
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| |||||| |||||||||| | ||||||||||||| ||||||||||||||    
T  38117101 atgaagcacggacacccctcggattaggcgtgtcccggtgtcggacacgtgttgtgt 38117157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 323
Target Start/End: Original strand, 20242717 - 20242768
Alignment:
Q  272 gtgttgtgtttgatactgacacatataattacactgaattatgtgattttct 323  Q
    |||||||||  || || |||||||||||||||||||||||||||||||||||    
T  20242717 gtgttgtgtccgacaccgacacatataattacactgaattatgtgattttct 20242768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 286 - 321
Target Start/End: Complemental strand, 31808132 - 31808097
Alignment:
Q  286 actgacacatataattacactgaattatgtgatttt 321  Q
    ||||||||||||||||||||||||||||||||||||    
T  31808132 actgacacatataattacactgaattatgtgatttt 31808097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 324
Target Start/End: Complemental strand, 21616813 - 21616779
Alignment:
Q  290 acacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||||||||||||||||||||||    
T  21616813 acacatataattacactgaattatgtgattttctc 21616779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 35449567 - 35449530
Alignment:
Q  287 ctgacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  35449567 ctgacacatataattacactgaattctgtgattttctc 35449530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 15657993 - 15657941
Alignment:
Q  218 aatgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgt 270  Q
    |||||||||||||||||||||||| || | ||||||||| ||| |||||||||    
T  15657993 aatgaagcatggacactcctcggactaggcgtgtcccggcgtcggacacgtgt 15657941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 18622719 - 18622679
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgt 259  Q
    |||||||| ||||||||||||||||| ||||||||||||||    
T  18622719 atgaagcacggacactcctcggattaagtgtgtcccggtgt 18622679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 26769639 - 26769583
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| ||||||||||||||||| | ||||||| ||||| ||||||||| ||||    
T  26769639 atgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgt 26769583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 37419871 - 37419823
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacg 267  Q
    |||||||| ||||||||||||||||| | ||||||||||||| ||||||    
T  37419871 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacg 37419823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 42511324 - 42511380
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| |||||||||||||||||   ||||||| ||||| ||||||||||||||    
T  42511324 atgaagcacggacactcctcggattagccgtgtccctgtgtcggacacgtgttgtgt 42511380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 320
Target Start/End: Complemental strand, 5367244 - 5367213
Alignment:
Q  289 gacacatataattacactgaattatgtgattt 320  Q
    ||||||||||||||||||||||||||||||||    
T  5367244 gacacatataattacactgaattatgtgattt 5367213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 18889598 - 18889633
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||| ||||||||||||||||||||||||||    
T  18889598 gacacatatgattacactgaattatgtgattttctc 18889633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 23718078 - 23718043
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||||||||| ||||||    
T  23718078 gacacatataattacactgaattatgtgactttctc 23718043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 24105750 - 24105715
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||||||||| ||||||    
T  24105750 gacacatataattacactgaattatgtgactttctc 24105715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 320
Target Start/End: Complemental strand, 28524478 - 28524447
Alignment:
Q  289 gacacatataattacactgaattatgtgattt 320  Q
    ||||||||||||||||||||||||||||||||    
T  28524478 gacacatataattacactgaattatgtgattt 28524447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 37411251 - 37411286
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||| |||||||||||||||||||||||    
T  37411251 gacacatataatcacactgaattatgtgattttctc 37411286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 270
Target Start/End: Complemental strand, 37559094 - 37559043
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgt 270  Q
    |||||||| ||||||||||||||||| | |||| |||||||| |||||||||    
T  37559094 atgaagcacggacactcctcggattaagcgtgtaccggtgtcggacacgtgt 37559043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 38355894 - 38355929
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||| |||||||||||||||||||||||    
T  38355894 gacacatataatcacactgaattatgtgattttctc 38355929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 39279727 - 39279692
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||||| ||||||||||    
T  39279727 gacacatataattacactgaattatttgattttctc 39279692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 44860372 - 44860337
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||||||||||||| |||||||||    
T  44860372 gacacatataattacactgaattatgcgattttctc 44860337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 324
Target Start/End: Original strand, 15909636 - 15909674
Alignment:
Q  286 actgacacatataattacactgaattatgtgattttctc 324  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  15909636 actgtcacatataattacactgaattatgtaattttctc 15909674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 323
Target Start/End: Complemental strand, 17776647 - 17776605
Alignment:
Q  281 ttgatactgacacatataattacactgaattatgtgattttct 323  Q
    |||| ||||||||||||||||||||||| ||||||| ||||||    
T  17776647 ttgacactgacacatataattacactgacttatgtggttttct 17776605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Original strand, 20922935 - 20922969
Alignment:
Q  289 gacacatataattacactgaattatgtgattttct 323  Q
    |||||||||||||||||| ||||||||||||||||    
T  20922935 gacacatataattacactaaattatgtgattttct 20922969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 324
Target Start/End: Original strand, 32749829 - 32749867
Alignment:
Q  286 actgacacatataattacactgaattatgtgattttctc 324  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  32749829 actgacacttattattacactgaattatgtgattttctc 32749867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Original strand, 34784989 - 34785023
Alignment:
Q  289 gacacatataattacactgaattatgtgattttct 323  Q
    |||||||||||||||||| ||||||||||||||||    
T  34784989 gacacatataattacactaaattatgtgattttct 34785023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 321
Target Start/End: Complemental strand, 28677958 - 28677929
Alignment:
Q  292 acatataattacactgaattatgtgatttt 321  Q
    ||||||||||||||||||||||||||||||    
T  28677958 acatataattacactgaattatgtgatttt 28677929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 30527596 - 30527637
Alignment:
Q  283 gatactgacacatataattacactgaattatgtgattttctc 324  Q
    ||||| |||||||||||||||||| |||||| ||||||||||    
T  30527596 gataccgacacatataattacactaaattatatgattttctc 30527637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 323
Target Start/End: Original strand, 2665897 - 2665929
Alignment:
Q  291 cacatataattacactgaattatgtgattttct 323  Q
    |||||||||||||||| ||||||||||||||||    
T  2665897 cacatataattacactaaattatgtgattttct 2665929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 15972990 - 15972934
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| ||||| || |||||||| ||||||||||| ||| ||||||||| ||||    
T  15972990 atgaagcacggacattcttcggattaggtgtgtcccggcgtcggacacgtgtcgtgt 15972934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 311
Target Start/End: Complemental strand, 19614241 - 19614213
Alignment:
Q  283 gatactgacacatataattacactgaatt 311  Q
    |||||||||||||||||||||||||||||    
T  19614241 gatactgacacatataattacactgaatt 19614213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 296 - 324
Target Start/End: Original strand, 21782832 - 21782860
Alignment:
Q  296 ataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||||||||||||||||    
T  21782832 ataattacactgaattatgtgattttctc 21782860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 28596586 - 28596530
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| ||||||||||||||||| | ||||||  ||||| ||||||||| ||||    
T  28596586 atgaagcacggacactcctcggattaggagtgtccgagtgtcggacacgtgtcgtgt 28596530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 289 - 321
Target Start/End: Original strand, 34691812 - 34691844
Alignment:
Q  289 gacacatataattacactgaattatgtgatttt 321  Q
    ||||||||||||||||||||||||| |||||||    
T  34691812 gacacatataattacactgaattatatgatttt 34691844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 289 - 321
Target Start/End: Original strand, 34714224 - 34714256
Alignment:
Q  289 gacacatataattacactgaattatgtgatttt 321  Q
    ||||||||||||||||||||||||| |||||||    
T  34714224 gacacatataattacactgaattatatgatttt 34714256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 44860448 - 44860392
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| |||||||||||| |||| |||||||||| |||| ||||| ||| ||||    
T  44860448 atgaagcacggacactcctcgaattaggtgtgtcccgatgtcggacacatgtcgtgt 44860392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 51)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 321
Target Start/End: Original strand, 1486646 - 1486748
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgat 318  Q
    ||||||||  |||||||||||||||| | ||||||||||||| ||||||||| ||||       || || ||||| ||||||||||||||||||||||||    
T  1486646 atgaagcacagacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacacgacaccgacacttataattacactgaattatgtgat 1486745  T
Q  319 ttt 321  Q
    |||    
T  1486746 ttt 1486748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 286 - 324
Target Start/End: Original strand, 7918215 - 7918253
Alignment:
Q  286 actgacacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7918215 actgacacatataattacactgaattatgtgattttctc 7918253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 286 - 324
Target Start/End: Complemental strand, 25361941 - 25361903
Alignment:
Q  286 actgacacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25361941 actgacacatataattacactgaattatgtgattttctc 25361903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 321
Target Start/End: Original strand, 40258875 - 40258972
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgat 318  Q
    |||||||||||||||||||||||||| | |||||| |||||| ||||      |||| |||| ||| || ||||| | ||||||||||||||||||||||    
T  40258875 atgaagcatggacactcctcggattaggcgtgtcctggtgtcggaca-----ggtgtcgtgtctgacaccgacacttgtaattacactgaattatgtgat 40258969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 18190061 - 18190106
Alignment:
Q  230 acactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||    
T  18190061 acactcctcggattaggtgtgtcccggtgtcggacacgtgttgtgt 18190106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 324
Target Start/End: Complemental strand, 40181976 - 40181888
Alignment:
Q  231 cactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||| | ||||||||||||  ||||||||||||||       || || || |||||||||||||||||||||||||||||||||    
T  40181976 cactcctcggattaggcgtgtcccggtgtaggacacgtgttgtgtcc-----gacaccgatacatataattacactgaattatgtgattttctc 40181888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 1864887 - 1864922
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  1864887 gacacatataattacactgaattatgtgattttctc 1864922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 321
Target Start/End: Original strand, 5898211 - 5898305
Alignment:
Q  222 aagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgatttt 321  Q
    ||||| |||||||||||||||||   ||||||||||||  ||||||||| ||||      ||| || ||| |||||||||||||||||||||||||||||    
T  5898211 aagcacggacactcctcggattagacgtgtcccggtgttggacacgtgtcgtgtc-----tgacaccgacgcatataattacactgaattatgtgatttt 5898305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 10233305 - 10233270
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  10233305 gacacatataattacactgaattatgtgattttctc 10233270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 34371765 - 34371730
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  34371765 gacacatataattacactgaattatgtgattttctc 34371730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 44482282 - 44482247
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  44482282 gacacatataattacactgaattatgtgattttctc 44482247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 25098563 - 25098597
Alignment:
Q  290 acacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||||||||||||||||||||||    
T  25098563 acacatataattacactgaattatgtgattttctc 25098597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 323
Target Start/End: Complemental strand, 30749892 - 30749858
Alignment:
Q  289 gacacatataattacactgaattatgtgattttct 323  Q
    |||||||||||||||||||||||||||||||||||    
T  30749892 gacacatataattacactgaattatgtgattttct 30749858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 323
Target Start/End: Complemental strand, 30771343 - 30771309
Alignment:
Q  289 gacacatataattacactgaattatgtgattttct 323  Q
    |||||||||||||||||||||||||||||||||||    
T  30771343 gacacatataattacactgaattatgtgattttct 30771309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 322
Target Start/End: Original strand, 17705593 - 17705626
Alignment:
Q  289 gacacatataattacactgaattatgtgattttc 322  Q
    ||||||||||||||||||||||||||||||||||    
T  17705593 gacacatataattacactgaattatgtgattttc 17705626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 19324612 - 19324579
Alignment:
Q  291 cacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||||||||||||||    
T  19324612 cacatataattacactgaattatgtgattttctc 19324579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 27965942 - 27965983
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtc 260  Q
    |||||||||||||||||||||||||| | |||||||||||||    
T  27965942 atgaagcatggacactcctcggattaggcgtgtcccggtgtc 27965983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 9828172 - 9828116
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| |||||||||||||||||   ||||||||||||| ||||||||| ||||    
T  9828172 atgaagcacggacactcctcggattagacgtgtcccggtgtcggacacgtgtcgtgt 9828116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 321
Target Start/End: Complemental strand, 13997935 - 13997903
Alignment:
Q  289 gacacatataattacactgaattatgtgatttt 321  Q
    |||||||||||||||||||||||||||||||||    
T  13997935 gacacatataattacactgaattatgtgatttt 13997903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 19562567 - 19562611
Alignment:
Q  229 gacactcctcggattatgtgtgtcccggtgtctgacacgtgttgt 273  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||||    
T  19562567 gacactcctcggattaggtgtgtccctgtgtcggacacgtgttgt 19562611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 40917877 - 40917821
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| ||||| ||||||||||| | ||||||||||||| ||||||||| ||||    
T  40917877 atgaagcacggacagtcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgt 40917821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 42359390 - 42359438
Alignment:
Q  218 aatgaagcatggacactcctcggattatgtgtgtcccggtgtctgacac 266  Q
    ||||||||| ||||||||||||||||| | ||||||||||||| |||||    
T  42359390 aatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 42359438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 321
Target Start/End: Complemental strand, 18337451 - 18337349
Alignment:
Q  214 gagcaatgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattat 313  Q
    |||| |||||||| ||||||||||||||| | |  |||||| ||||| ||||||||||||||       || || ||||| | |||||||||||||||||    
T  18337451 gagctatgaagcacggacactcctcggatcaggcatgtcccagtgtcggacacgtgttgtgtcc-----gacaccgacacttgtaattacactgaattat 18337357  T
Q  314 gtgatttt 321  Q
    ||||||||    
T  18337356 gtgatttt 18337349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 20157357 - 20157392
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||| ||||||||||||||||||||||||||    
T  20157357 gacacatatgattacactgaattatgtgattttctc 20157392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 273 - 324
Target Start/End: Original strand, 23636040 - 23636091
Alignment:
Q  273 tgttgtgtttgatactgacacatataattacactgaattatgtgattttctc 324  Q
    |||||||| ||| || |||||||| |||||||||||||||||| ||||||||    
T  23636040 tgttgtgtctgacaccgacacatacaattacactgaattatgtaattttctc 23636091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 36878513 - 36878478
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    ||||| ||||||||||||||||||||||||||||||    
T  36878513 gacacctataattacactgaattatgtgattttctc 36878478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 324
Target Start/End: Complemental strand, 6427401 - 6427367
Alignment:
Q  290 acacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||| |||||||||||||||||||    
T  6427401 acacatataattacattgaattatgtgattttctc 6427367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 321
Target Start/End: Complemental strand, 12612024 - 12611986
Alignment:
Q  283 gatactgacacatataattacactgaattatgtgatttt 321  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  12612024 gatactgacacatatgattacactcaattatgtgatttt 12611986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 320
Target Start/End: Complemental strand, 13436509 - 13436479
Alignment:
Q  290 acacatataattacactgaattatgtgattt 320  Q
    |||||||||||||||||||||||||||||||    
T  13436509 acacatataattacactgaattatgtgattt 13436479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 321
Target Start/End: Complemental strand, 23622376 - 23622338
Alignment:
Q  283 gatactgacacatataattacactgaattatgtgatttt 321  Q
    ||||||||||||| |||||||||||| ||||||||||||    
T  23622376 gatactgacacatttaattacactgagttatgtgatttt 23622338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 324
Target Start/End: Original strand, 34712387 - 34712425
Alignment:
Q  286 actgacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  34712387 actgacacatataattacactaaattatgttattttctc 34712425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 324
Target Start/End: Complemental strand, 36906048 - 36906014
Alignment:
Q  290 acacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||| ||||||||||||||||||||    
T  36906048 acacatataattactctgaattatgtgattttctc 36906014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 1704937 - 1704986
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgt 268  Q
    ||||||||||||||||||| |||||| | ||||| ||||||| |||||||    
T  1704937 atgaagcatggacactccttggattaggcgtgtctcggtgtcggacacgt 1704986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 2784623 - 2784574
Alignment:
Q  274 gttgtgtttgatactgacacatataattacactgaattatgtgattttct 323  Q
    ||||||| ||| || |||||||||||||| ||| ||||||||||||||||    
T  2784623 gttgtgtctgacaccgacacatataattatactcaattatgtgattttct 2784574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 7918156 - 7918197
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtc 260  Q
    |||||||| ||||||||||||||||| |||||||| ||||||    
T  7918156 atgaagcacggacactcctcggattaggtgtgtcctggtgtc 7918197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 12443469 - 12443502
Alignment:
Q  291 cacatataattacactgaattatgtgattttctc 324  Q
    |||||| |||||||||||||||||||||||||||    
T  12443469 cacatacaattacactgaattatgtgattttctc 12443502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 324
Target Start/End: Complemental strand, 34298482 - 34298453
Alignment:
Q  295 tataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||||||||||||||||    
T  34298482 tataattacactgaattatgtgattttctc 34298453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 324
Target Start/End: Original strand, 43492483 - 43492536
Alignment:
Q  271 tgtgttgtgtttgatactgacacatataattacactgaattatgtgattttctc 324  Q
    |||||||||| ||| || |||||| |||||||||| |||||| |||||||||||    
T  43492483 tgtgttgtgtctgacaccgacacacataattacaccgaattacgtgattttctc 43492536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 113410 - 113370
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgt 259  Q
    ||||||||||| |||||||||||||| | ||||||||||||    
T  113410 atgaagcatgggcactcctcggattaggcgtgtcccggtgt 113370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 289 - 321
Target Start/End: Original strand, 398772 - 398804
Alignment:
Q  289 gacacatataattacactgaattatgtgatttt 321  Q
    ||||| |||||||||||||||||||||||||||    
T  398772 gacacctataattacactgaattatgtgatttt 398804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 289 - 321
Target Start/End: Complemental strand, 5944335 - 5944303
Alignment:
Q  289 gacacatataattacactgaattatgtgatttt 321  Q
    ||||| |||||||||||||||||||||||||||    
T  5944335 gacacttataattacactgaattatgtgatttt 5944303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 5944411 - 5944355
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| | ||||||||||||||| | || |||||||||| |||| |||||||||    
T  5944411 atgaagcacgaacactcctcggattaggcgtatcccggtgtcggacatgtgttgtgt 5944355  T

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Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 6414933 - 6414989
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| ||||||||||||||| |  |||||| ||||||| ||||||||| ||||    
T  6414933 atgaagcacggacactcctcggatgaaatgtgtcgcggtgtcagacacgtgtcgtgt 6414989  T

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Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 6427592 - 6427536
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| |||||||| || ||||| | ||||||||||||| ||||||||| ||||    
T  6427592 atgaagcacggacactcatcagattaggcgtgtcccggtgtcggacacgtgtcgtgt 6427536  T

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Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 289 - 321
Target Start/End: Complemental strand, 9828096 - 9828064
Alignment:
Q  289 gacacatataattacactgaattatgtgatttt 321  Q
    |||||||| ||||||||||||||||||||||||    
T  9828096 gacacataaaattacactgaattatgtgatttt 9828064  T

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Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 292 - 324
Target Start/End: Original strand, 14332652 - 14332684
Alignment:
Q  292 acatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||| |||||||||||||||||    
T  14332652 acatataattacactaaattatgtgattttctc 14332684  T

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Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 25934674 - 25934634
Alignment:
Q  283 gatactgacacatataattacactgaattatgtgattttct 323  Q
    ||||| ||||||||||||||||||| ||| |||||||||||    
T  25934674 gataccgacacatataattacactgtattttgtgattttct 25934634  T

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Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 289 - 321
Target Start/End: Original strand, 35919283 - 35919315
Alignment:
Q  289 gacacatataattacactgaattatgtgatttt 321  Q
    ||||| |||||||||||||||||||||||||||    
T  35919283 gacacttataattacactgaattatgtgatttt 35919315  T

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Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 37598948 - 37598892
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| ||||||||||||||||| | |||||||  |||| ||||||||| ||||    
T  37598948 atgaagcacggacactcctcggattaggcgtgtcccattgtcggacacgtgtcgtgt 37598892  T

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Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 47989625 - 47989569
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| ||||||||||||||||| | |||||||| |||| |||| |||| ||||    
T  47989625 atgaagcacggacactcctcggattaggcgtgtcccgatgtcagacatgtgtcgtgt 47989569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 289 - 321
Target Start/End: Complemental strand, 52903301 - 52903269
Alignment:
Q  289 gacacatataattacactgaattatgtgatttt 321  Q
    ||||||||||||||||||||||||| |||||||    
T  52903301 gacacatataattacactgaattatatgatttt 52903269  T

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Target: scaffold0123 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 44526 - 44567
Alignment:
Q  283 gatactgacacatataattacactgaattatgtgattttctc 324  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  44526 gataccgacacatataattacactgaattatgtgattttctc 44567  T

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Target: scaffold0652 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 404 - 452
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacg 267  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||||    
T  404 atgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacg 452  T

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Target: scaffold0128 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 32821 - 32774
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacac 266  Q
    ||||||||  |||||||||||||||||||||||||||||||| |||||    
T  32821 atgaagcaccgacactcctcggattatgtgtgtcccggtgtcggacac 32774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 71853 - 71797
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    ||||||||  ||||||||||||||||   ||||||||||||| ||||||||||||||    
T  71853 atgaagcaccgacactcctcggattagtcgtgtcccggtgtcggacacgtgttgtgt 71797  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 241722 - 241666
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| ||||||| ||||||||| | ||||||||||||| ||||||||| ||||    
T  241722 atgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgt 241666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 348170 - 348122
Alignment:
Q  273 tgttgtgtttgatactgacacatataattacactgaattatgtgatttt 321  Q
    |||||||||||| || ||||| |||||||||||| ||||||||||||||    
T  348170 tgttgtgtttgacacagacacctataattacacttaattatgtgatttt 348122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 236916 - 236964
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacg 267  Q
    ||||||||  |||||||||| ||||| ||||||||||||||| ||||||    
T  236916 atgaagcacagacactcctcagattaggtgtgtcccggtgtcagacacg 236964  T

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Target: scaffold0171 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 286 - 321
Target Start/End: Complemental strand, 23566 - 23531
Alignment:
Q  286 actgacacatataattacactgaattatgtgatttt 321  Q
    |||||||| |||||||||||||||||||||||||||    
T  23566 actgacacttataattacactgaattatgtgatttt 23531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 289 - 321
Target Start/End: Complemental strand, 23472 - 23440
Alignment:
Q  289 gacacatataattacactgaattatgtgatttt 321  Q
    ||||| |||||||||||||||||||||||||||    
T  23472 gacacttataattacactgaattatgtgatttt 23440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 53232 - 53197
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    ||||| ||||||||||||||||||||||||||||||    
T  53232 gacacttataattacactgaattatgtgattttctc 53197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 9754 - 9789
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    |||||||||||||||||||||||| |||||||||||    
T  9754 gacacatataattacactgaattaagtgattttctc 9789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 9678 - 9734
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| ||||||||||||||||||  |||||||| |||| |||| |||| ||||    
T  9678 atgaagcacggacactcctcggattatacgtgtcccgatgtcagacaagtgtcgtgt 9734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 135319 - 135354
Alignment:
Q  289 gacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||||||||||| ||||||||||||||||||    
T  135319 gacacatataattacacagaattatgtgattttctc 135354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 324
Target Start/End: Original strand, 263376 - 263414
Alignment:
Q  286 actgacacatataattacactgaattatgtgattttctc 324  Q
    |||||||| |||||||||||||||||||||| |||||||    
T  263376 actgacacttataattacactgaattatgtggttttctc 263414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 4823 - 4879
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| ||||||||||||||||| | ||||||| ||||| |||| |||| ||||    
T  4823 atgaagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgt 4879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 51940 - 51900
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgt 259  Q
    |||||||||||||| ||||||||||| | ||||||||||||    
T  51940 atgaagcatggacattcctcggattaggcgtgtcccggtgt 51900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 90912 - 90860
Alignment:
Q  272 gtgttgtgtttgatactgacacatataattacactgaattatgtgattttctc 324  Q
    ||||||||| ||| |  |||| |||||||||||||||||||| ||||||||||    
T  90912 gtgttgtgtctgacatcgacatatataattacactgaattatatgattttctc 90860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 92939 - 92883
Alignment:
Q  219 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 275  Q
    |||||||| ||||||||||||||||| | |||||| |||||| |||| |||| ||||    
T  92939 atgaagcacggacactcctcggattaggcgtgtccaggtgtccgacatgtgtcgtgt 92883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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