View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19856_low_26 (Length: 312)
Name: NF19856_low_26
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 80 - 295
Target Start/End: Complemental strand, 9970523 - 9970308
Alignment:
| Q |
80 |
ggtgacaagagaagatttatacaacgtgatgtgtgcaatggtgcctctatattttgcaatgttagttgcttatggttcagtaaagtgttgcaaaatgttc |
179 |
Q |
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| T |
9970523 |
ggtgacaagagaagatttatacaacgtgatgtgtgcaatggtacctctatattttgcaatgttagttgcttatggttcagtaaagtgttgcaaaatgttc |
9970424 |
T |
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| Q |
180 |
accccagatcaatgttccggcataaaccgattcgtcgcagtttttgcggttccagttctatcttttcacttcatttctcttaacaatccttatcaaatgg |
279 |
Q |
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| T |
9970423 |
accccagatcaatgttccggcataaaccgattcgtcgcagtttttgctgttccagttctatcttttcacttcatttctctcaacaatccttatcaaatgg |
9970324 |
T |
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| Q |
280 |
acacaaaattcatctt |
295 |
Q |
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| T |
9970323 |
acacaaaatttatctt |
9970308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 253
Target Start/End: Original strand, 34970753 - 34970861
Alignment:
| Q |
145 |
ttgcttatggttcagtaaagtgttgcaaaatgttcaccccagatcaatgttccggcataaaccgattcgtcgcagtttttgcggttccagttctatcttt |
244 |
Q |
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| T |
34970753 |
ttgcctatggttctgtaaaatggtggaaaatcttcacaccagatcaatgttcaggcataaaccgttttgtagcactttttgcagttccacttctctcatt |
34970852 |
T |
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| Q |
245 |
tcacttcat |
253 |
Q |
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| T |
34970853 |
ccacttcat |
34970861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 52716270 - 52716343
Alignment:
| Q |
171 |
aaaatgttcaccccagatcaatgttccggcataaaccgattcgtcgcagtttttgcggttccagttctatcttt |
244 |
Q |
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| T |
52716270 |
aaaatcttcacaccagatcaatgttctggtataaaccgttttgtcgctgttttcgcagttccattactatcttt |
52716343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 33102005 - 33102069
Alignment:
| Q |
189 |
caatgttccggcataaaccgattcgtcgcagtttttgcggttccagttctatcttttcacttcat |
253 |
Q |
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| T |
33102005 |
caatgttccggcataaaccgtttcgtcgcgattttcgcagttcctcttctatcctttcatttcat |
33102069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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