View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19856_low_27 (Length: 306)
Name: NF19856_low_27
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_low_27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 7 - 306
Target Start/End: Original strand, 5988228 - 5988527
Alignment:
| Q |
7 |
aaaacaaccctagccaaactcctttacaacaatccagaagttaaggaaagatttgggcttagagggtgggtagttgtctcaaaagattttgatattttca |
106 |
Q |
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| T |
5988228 |
aaaacaaccctagccaaactcctttacaacaatctagaagttaaggaaagatttggggtgagagggtgggtagttgtctcaaaagattttgatattttca |
5988327 |
T |
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| Q |
107 |
gggttttggaaaccattcttgaatctattacttcacagggaatcagtagtggtaatctgaattctcaacctcttgaattttccaatacaaaaataaatgc |
206 |
Q |
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| T |
5988328 |
gggttttggaaactattcttgaatctattacttcacagggaatcagtagtggtaatctgaattctcaacctcttgaattttccaatacaaaaattaatga |
5988427 |
T |
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| Q |
207 |
caccagtgacatgcaccgcaatcttctattagtgaaactgcaacaaattttaagcattgcaaattttctgctagtactggatgatgtgtgggatacaaat |
306 |
Q |
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| T |
5988428 |
caccagtgacatgcaccgcaatcttctattagtgaaactgcaacaaattttaagcactacaaattttttgctactactggatgatgtgtgggatacaaat |
5988527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 11491410 - 11491352
Alignment:
| Q |
85 |
tcaaaagattttgatattttcagggttttggaaaccattcttgaatctattacttcaca |
143 |
Q |
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| T |
11491410 |
tcaaatgattttgatattttcagggtttatgaaaccattctagaatctattacttcaca |
11491352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 7492569 - 7492509
Alignment:
| Q |
83 |
tctcaaaagattttgatattttcagggttttggaaaccattcttgaatctattacttcaca |
143 |
Q |
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| T |
7492569 |
tctcaaaagattttgataatttgaatgtttttgaaaccattcttgaatctattacttcaca |
7492509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 18387745 - 18387862
Alignment:
| Q |
26 |
tcctttacaacaatccagaagttaaggaaagatttgggcttagagggtgggtagttgtctcaaaagattttgatattttcagggttttggaaaccattct |
125 |
Q |
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| T |
18387745 |
tcctttacaatgatccagatgttaaggacaaatttggagtgcgagggtgggcacgtgtcccagcaaattttgttgttatcagggttttggaaaccattct |
18387844 |
T |
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| Q |
126 |
tgaatctattacttcaca |
143 |
Q |
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| T |
18387845 |
tgaatctatcacttcaca |
18387862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 17311635 - 17311673
Alignment:
| Q |
102 |
tttcagggttttggaaaccattcttgaatctattacttc |
140 |
Q |
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| T |
17311635 |
tttcagggttttggaaaccattcttgaatctgttacttc |
17311673 |
T |
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