View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19856_low_28 (Length: 293)

Name: NF19856_low_28
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19856_low_28
NF19856_low_28
[»] chr2 (16 HSPs)
chr2 (1-293)||(32207119-32207411)
chr2 (168-286)||(32212201-32212319)
chr2 (180-293)||(32118491-32118605)
chr2 (179-293)||(32147582-32147696)
chr2 (181-293)||(32152345-32152452)
chr2 (216-293)||(32157558-32157635)
chr2 (179-286)||(32156411-32156518)
chr2 (203-293)||(32182297-32182387)
chr2 (179-293)||(32174187-32174301)
chr2 (179-286)||(32110227-32110334)
chr2 (193-293)||(2821315-2821414)
chr2 (239-286)||(32534228-32534275)
chr2 (203-278)||(32153369-32153444)
chr2 (179-242)||(32182216-32182279)
chr2 (97-139)||(32201068-32201110)
chr2 (97-139)||(32212338-32212380)


Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-150; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 32207411 - 32207119
Alignment:
Q  1 taaagtaattaaagagtccccaaaaaatcttttgtttgctctctggcagtttaggtagccttatcgttgttctatgnnnnnnnaaattagttgtgccgac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       |||||||||||||||||    
T  32207411 taaagtaattaaagagtccccaaaaaatcttttgtttgctctctggcagttcaggtagccttatcgttgttctatgtttttttaaattagttgtgccgac 32207312  T
Q  101 gtgttcgtgtcagtgtcatgtcatgtgttcgtgttggagcctgtgtcggagtctgccgcagtcccttcttcatagctgcctagttcatgttcttctttga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32207311 gtgttcgtgtcagtgtcatgtcatgtgttcgtgttggagcctgtgtcggagtctgccgcagtcccttcttcatagctgcctagttcatgttcttctttga 32207212  T
Q  201 cattttcttcattattaatgtcttccttgatcattttcttggcttggagggatttgataaggtcttctagacattctgttgcatcacagtcct 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32207211 cattttcttcattattaatgtcttccttgatcattttcttggcttggagggatttgataaggtcttctagacattctgttgcatcacagtcct 32207119  T

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Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 168 - 286
Target Start/End: Complemental strand, 32212319 - 32212201
Alignment:
Q  168 cttcatagctgcctagttcatgttcttctttgacattttcttcattattaatgtcttccttgatcattttcttggcttggagggatttgataaggtcttc 267  Q
    |||||||||| |||||||||||||||||||||| |||||||||||| || || |||||||| || ||||||||||||||||||||||||||||||||||     
T  32212319 cttcatagctacctagttcatgttcttctttgatattttcttcattttttatctcttccttcatgattttcttggcttggagggatttgataaggtcttg 32212220  T
Q  268 tagacattctgttgcatca 286  Q
    ||| |||||||| ||||||    
T  32212219 taggcattctgtagcatca 32212201  T

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Target: chr2; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 180 - 293
Target Start/End: Original strand, 32118491 - 32118605
Alignment:
Q  180 ctagttcatgttcttctttgacattttcttcattat-taatgtcttccttgatcattttcttggcttggagggatttgataaggtcttctagacattctg 278  Q
    ||||||||||||||||||||| |||||||||||| | | || ||||||||||||||||||||||||||||||||||  |||||||||| ||| |||||||    
T  32118491 ctagttcatgttcttctttgatattttcttcattctatcatctcttccttgatcattttcttggcttggagggattcaataaggtcttgtaggcattctg 32118590  T
Q  279 ttgcatcacagtcct 293  Q
    | |||||||| ||||    
T  32118591 tagcatcacaatcct 32118605  T

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Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 179 - 293
Target Start/End: Original strand, 32147582 - 32147696
Alignment:
Q  179 cctagttcatgttcttctttgacattttcttcattattaatgtcttccttgatcattttcttggcttggagggatttgataaggtcttctagacattctg 278  Q
    |||||||||  ||||||||||  |||||||||| | || || |||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  32147582 cctagttcaccttcttctttgttattttcttcaatctttatctcttccttgatcattttcttggcttggaggaatttgataaggtcttgtaggcattctg 32147681  T
Q  279 ttgcatcacagtcct 293  Q
    | |||||||| ||||    
T  32147682 tagcatcacaatcct 32147696  T

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Target: chr2; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 181 - 293
Target Start/End: Original strand, 32152345 - 32152452
Alignment:
Q  181 tagttcatgttcttctttgacattttcttcattattaatgtcttccttgatcattttcttggcttggagggatttgataaggtcttctagacattctgtt 280  Q
    ||||||||||||| |||||| | |||||||||| |||||||||||||||||||||||||||||||||| ||||||     |||||| ||| ||||||||     
T  32152345 tagttcatgttctcctttgataatttcttcatttttaatgtcttccttgatcattttcttggcttggaaggattt-----ggtcttgtaggcattctgta 32152439  T
Q  281 gcatcacagtcct 293  Q
    |||||||| ||||    
T  32152440 gcatcacaatcct 32152452  T

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Target: chr2; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 216 - 293
Target Start/End: Original strand, 32157558 - 32157635
Alignment:
Q  216 taatgtcttccttgatcattttcttggcttggagggatttgataaggtcttctagacattctgttgcatcacagtcct 293  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||| |||||||| ||||    
T  32157558 taatctcttccttgatcattttcttggcttggaggaatttgataaggtcttgtaggcattctgtagcatcacaatcct 32157635  T

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Target: chr2; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 179 - 286
Target Start/End: Original strand, 32156411 - 32156518
Alignment:
Q  179 cctagttcatgttcttctttgacattttcttcattattaatgtcttccttgatcattttcttggcttggagggatttgataaggtcttctagacattctg 278  Q
    |||||||||  ||||||||||||||||||||| || || || ||||||||  ||||||||||  |||||||| ||||||||||||||| ||| |||||||    
T  32156411 cctagttcagattcttctttgacattttcttccttctttatctcttcctttttcattttctttacttggaggaatttgataaggtcttgtaggcattctg 32156510  T
Q  279 ttgcatca 286  Q
    | ||||||    
T  32156511 tagcatca 32156518  T

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Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 203 - 293
Target Start/End: Original strand, 32182297 - 32182387
Alignment:
Q  203 ttttcttcattattaatgtcttccttgatcattttcttggcttggagggatttgataaggtcttctagacattctgttgcatcacagtcct 293  Q
    ||||||||||| || |  |||||||||||||||||||||||||| ||| ||||||||||||||| ||| |||||||| |||||||| ||||    
T  32182297 ttttcttcattctttacctcttccttgatcattttcttggcttgcaggaatttgataaggtcttgtaggcattctgtagcatcacaatcct 32182387  T

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Target: chr2; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 179 - 293
Target Start/End: Original strand, 32174187 - 32174301
Alignment:
Q  179 cctagttcatgttcttctttgacattttcttcattattaatgtcttccttgatcattttcttggcttggagggatttgataaggtcttctagacattctg 278  Q
    |||||||||  ||||||||| |  ||||||||||| || |  |||||||||||||||||||| ||||||||| || | |||||||||| ||| |||||||    
T  32174187 cctagttcaccttcttctttaatgttttcttcattttttacctcttccttgatcattttctttgcttggaggaatattataaggtcttgtaggcattctg 32174286  T
Q  279 ttgcatcacagtcct 293  Q
    | |||||||| ||||    
T  32174287 tagcatcacaatcct 32174301  T

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Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 286
Target Start/End: Original strand, 32110227 - 32110334
Alignment:
Q  179 cctagttcatgttcttctttgacattttcttcattattaatgtcttccttgatcattttcttggcttggagggatttgataaggtcttctagacattctg 278  Q
    ||||| || ||||||||||||  |||||||||  | ||| | ||||||| || ||||||||||||||||||| ||||||||||||||| ||  |||||||    
T  32110227 cctagatcttgttcttctttgctattttcttctctcttactctcttcctggaccattttcttggcttggaggaatttgataaggtcttgtaagcattctg 32110326  T
Q  279 ttgcatca 286  Q
    | ||||||    
T  32110327 tagcatca 32110334  T

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Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 293
Target Start/End: Complemental strand, 2821414 - 2821315
Alignment:
Q  193 ttctttgacattttcttcattattaatgtcttccttgatcattttcttggcttggagggatttgataaggtcttctagacattctgttgcatcacagtcc 292  Q
    ||||||||  ||||||||||| || || |||||||| ||| ||| ||||||||||||| ||||||||||||||| ||| |||| ||| |||||||| |||    
T  2821414 ttctttgatgttttcttcattctttatctcttccttcatcgttt-cttggcttggaggaatttgataaggtcttgtaggcattttgtagcatcacaatcc 2821316  T

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Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 32534228 - 32534275
Alignment:
Q  239 ttggcttggagggatttgataaggtcttctagacattctgttgcatca 286  Q
    |||||||||||||||||||||||||||| ||| |||||||| ||||||    
T  32534228 ttggcttggagggatttgataaggtcttgtaggcattctgtagcatca 32534275  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 278
Target Start/End: Original strand, 32153369 - 32153444
Alignment:
Q  203 ttttcttcattattaatgtcttccttgatcattttcttggcttggagggatttgataaggtcttctagacattctg 278  Q
    ||||||||||| || || || |  ||||| |||||||||||||||||| |||||||||||| || ||| |||||||    
T  32153369 ttttcttcattctttatctcatgtttgatgattttcttggcttggaggaatttgataaggtattgtaggcattctg 32153444  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 32182216 - 32182279
Alignment:
Q  179 cctagttcatgttcttctttgacattttcttcattattaatgtcttccttgatcattttcttgg 242  Q
    |||||||||  ||||||||||| |||||||||||| ||  | ||||||| ||||||||||||||    
T  32182216 cctagttcaccttcttctttgatattttcttcattctttgtctcttcctcgatcattttcttgg 32182279  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 32201068 - 32201110
Alignment:
Q  97 cgacgtgttcgtgtcagtgtcatgtcatgtgttcgtgttggag 139  Q
    |||||||| |||||||||||| ||||| |||||||||||||||    
T  32201068 cgacgtgtccgtgtcagtgtcgtgtcaggtgttcgtgttggag 32201110  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 139
Target Start/End: Complemental strand, 32212380 - 32212338
Alignment:
Q  97 cgacgtgttcgtgtcagtgtcatgtcatgtgttcgtgttggag 139  Q
    ||||||||||||||||||||||||||| |||| ||||| ||||    
T  32212380 cgacgtgttcgtgtcagtgtcatgtcaggtgtccgtgtcggag 32212338  T

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