View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19856_low_3 (Length: 604)
Name: NF19856_low_3
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 318 - 594
Target Start/End: Complemental strand, 16297808 - 16297532
Alignment:
| Q |
318 |
gttgaataccgatatcatctaattttgattatgcagaatcagaagattaatttgagtaaaattgagcagcttgtgattttcatttgttgataatatgtag |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16297808 |
gttgaataccgatatcatctaattttgattatgcagaaccagaagattaatttgagtaaaattgagcagcttgtgattttcatttgttgataatatgtac |
16297709 |
T |
|
| Q |
418 |
gtatttttgctcaaagttttgtggtttgaattggtatcaatattttcatcatttttatgctattggcttactatttttgtatctgcagcttttgttaagc |
517 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16297708 |
gtatttttgctcaaagtcttgtggtttgaattggtatcaatattttcaacatttttatgctattggcttactatttttgtatctgcagcttttgttaagc |
16297609 |
T |
|
| Q |
518 |
ctgccattgctctctattgatgggcaaatttgctttgaatctcaaagcatcaagatgcactttactttggatgatgt |
594 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
16297608 |
ctgccattgctctctattgatgtgcaaatttgctttgaatctcaaagcatcaagatgcaatttactttggatgatgt |
16297532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 318 - 594
Target Start/End: Complemental strand, 16305510 - 16305234
Alignment:
| Q |
318 |
gttgaataccgatatcatctaattttgattatgcagaatcagaagattaatttgagtaaaattgagcagcttgtgattttcatttgttgataatatgtag |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16305510 |
gttgaataccgatatcatctaattttgattatgcagaaccagaagattaatttgagtaaaattgagcagcttgtgattttcatttgttgataatatgtac |
16305411 |
T |
|
| Q |
418 |
gtatttttgctcaaagttttgtggtttgaattggtatcaatattttcatcatttttatgctattggcttactatttttgtatctgcagcttttgttaagc |
517 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
16305410 |
gtatttttactcaaagtcttgtggtttgaattggtatcaatattttcaacatttttatgctattggcttactatttttgtatatgcagcttttgttaagc |
16305311 |
T |
|
| Q |
518 |
ctgccattgctctctattgatgggcaaatttgctttgaatctcaaagcatcaagatgcactttactttggatgatgt |
594 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
16305310 |
ctgccattgctctctattgatgtgcaaatttgctttgaatctcaaagcatcaagatgcaatttactttggatgatgt |
16305234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 16298125 - 16297861
Alignment:
| Q |
1 |
tattacgcagctgtgtttgattttgttcacaataaaatcttaattaaatatttctattttgttatcacaaggactattttgtagctgtttttactattat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16298125 |
tattacgcagctgtgtttgattttgttcacaataaaatcttaattacatatttctattttgttatcacaaggactattttgtagctgtttttactattat |
16298026 |
T |
|
| Q |
101 |
ggctatggctgatttggagaacaatttgttgagatttgaatcattggtactgcctcaggtatggtctgatgtgggagtttattctgagtgtttttatctg |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
16298025 |
ggctatggctgatttggagaacagtttgttgacatttgaatcattggtactgcctcaggtatggtctgatgtgggagttttttcagagtgtttttatctg |
16297926 |
T |
|
| Q |
201 |
cttagtgggtctgtttgttgctggtagcagcgtgagtattgtgttggttttgaggccagcatgtg |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16297925 |
cttagtgggtctgtttgttgctggtagcagcgtgagtattgtgttggttttgaggccagtatgtg |
16297861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 16305827 - 16305563
Alignment:
| Q |
1 |
tattacgcagctgtgtttgattttgttcacaataaaatcttaattaaatatttctattttgttatcacaaggactattttgtagctgtttttactattat |
100 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16305827 |
tattacacaactgtgtttgattttgttcacaataaaatcttaattacatatttctattttgttatcacaaggactattttgtagctgtttttactattat |
16305728 |
T |
|
| Q |
101 |
ggctatggctgatttggagaacaatttgttgagatttgaatcattggtactgcctcaggtatggtctgatgtgggagtttattctgagtgtttttatctg |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
16305727 |
ggctatggctgatttggagaacagtttgttgacatttgaatcattggtactgcctcaggtatggtctgatgtgggagttttttcagagtgtttttatctg |
16305628 |
T |
|
| Q |
201 |
cttagtgggtctgtttgttgctggtagcagcgtgagtattgtgttggttttgaggccagcatgtg |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
16305627 |
cttagtgggtctgtttgttgctggtagcagcgtgagtattgtgttggttttgaggcaagtatgtg |
16305563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 318 - 594
Target Start/End: Complemental strand, 22895295 - 22895019
Alignment:
| Q |
318 |
gttgaataccgatatcatctaattttgattatgcagaatcagaagattaatttgagtaaaattgagcagcttgtgattttcatttgttgataatatgtag |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22895295 |
gttgaataccgatatcatctaattttgattatgcagaaccagaagattaatttgagtaaaattgagcagcttgtgattttcatttgttgataatatgtag |
22895196 |
T |
|
| Q |
418 |
gtatttttgctcaaagttttgtggtttgaattggtatcaatattttcatcatttttatgctattggcttactatttttgtatctgcagcttttgttaagc |
517 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22895195 |
gtatttttcctcaaagtcttgtggtttgaattggtatcaatattttcatcatttttatgctattggcttactatttttgtatttgcagcttttgttaagc |
22895096 |
T |
|
| Q |
518 |
ctgccattgctctctattgatgggcaaatttgctttgaatctcaaagcatcaagatgcactttactttggatgatgt |
594 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22895095 |
ctgccattgctctctattgatgtgcaaatttgctttgaatctcaaagtatcaagatgcactttactttggatgatgt |
22895019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 22895612 - 22895348
Alignment:
| Q |
1 |
tattacgcagctgtgtttgattttgttcacaataaaatcttaattaaatatttctattttgttatcacaaggactattttgtagctgtttttactattat |
100 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22895612 |
tattactcatctgtgtttgattttgttcacaataaaatcttaattacatatttctattttgttatcacaaggactattttgtagctgtttttactattat |
22895513 |
T |
|
| Q |
101 |
ggctatggctgatttggagaacaatttgttgagatttgaatcattggtactgcctcaggtatggtctgatgtgggagtttattctgagtgtttttatctg |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22895512 |
ggctatggctgatttggagaacagtttgttgagatttgaatcattggtactgcctcaggtatggtctgatgtgggagttttttctgagtgtttttatctg |
22895413 |
T |
|
| Q |
201 |
cttagtgggtctgtttgttgctggtagcagcgtgagtattgtgttggttttgaggccagcatgtg |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
22895412 |
cttagtgggtctgtttgttgctggtagcagcgtgagtattgtgttggttttgaggctagtatgtg |
22895348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 328 - 472
Target Start/End: Complemental strand, 15976163 - 15976019
Alignment:
| Q |
328 |
gatatcatctaattttgattatgcagaatcagaagattaatttgagtaaaattgagcagcttgtgattttcatttgttgataatatgtaggtatttttgc |
427 |
Q |
| |
|
||||||||||| |||||||||||||||| || ||| || |||| ||| || |||||||||||||||||| |||||||||| || | ||||||||||||| |
|
|
| T |
15976163 |
gatatcatctagttttgattatgcagaaccataagtttgatttcagtgaatttgagcagcttgtgatttgcatttgttgaaaacacataggtatttttgc |
15976064 |
T |
|
| Q |
428 |
tcaaagttttgtggtttgaattggtatcaatattttcatcatttt |
472 |
Q |
| |
|
|||| || |||||||||||||| | |||||||||||| |||||| |
|
|
| T |
15976063 |
tcaatgtcttgtggtttgaatttgattcaatattttcaccatttt |
15976019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 398 - 594
Target Start/End: Complemental strand, 3874009 - 3873804
Alignment:
| Q |
398 |
catttgttgataatatgtaggtatttttgctcaaagttttgtggtttgaattggtatcaatattttcatcatttttatgctattggcttactatttttgt |
497 |
Q |
| |
|
|||||||||| |||| |||||||| |||||||| || |||||||||||| | | |||||||||||| | |||| ||| | ||| |||| |||||| |
|
|
| T |
3874009 |
catttgttgaaaatacataggtattcttgctcaatgtcttgtggtttgaaattgattcaatattttcaccgttttcatgtttgtggtttaccgtttttgc |
3873910 |
T |
|
| Q |
498 |
atctgcagcttttgttaagcctgccattgctctctattgatgg---------gcaaatttgctttgaatctcaaagcatcaagatgcactttactttgga |
588 |
Q |
| |
|
|||||||||||| |||||| ||||| || | ||||| |||| ||||||||||||||||||| ||||||||| ||| || ||||||||||| |
|
|
| T |
3873909 |
atctgcagctttaattaagcatgccaatgttgtctatggatgatgttaagttgcaaatttgctttgaatcttaaagcatcatgatccattttactttgga |
3873810 |
T |
|
| Q |
589 |
tgatgt |
594 |
Q |
| |
|
|||||| |
|
|
| T |
3873809 |
tgatgt |
3873804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University