View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19856_low_31 (Length: 283)

Name: NF19856_low_31
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19856_low_31
NF19856_low_31
[»] chr4 (2 HSPs)
chr4 (12-267)||(16866090-16866345)
chr4 (15-116)||(1007170-1007271)
[»] chr8 (5 HSPs)
chr8 (12-260)||(40610007-40610255)
chr8 (17-267)||(27888009-27888258)
chr8 (17-267)||(27946667-27946916)
chr8 (17-267)||(28026910-28027159)
chr8 (24-184)||(2083626-2083786)
[»] chr3 (1 HSPs)
chr3 (12-250)||(20545077-20545310)
[»] chr1 (1 HSPs)
chr1 (12-246)||(47144396-47144631)
[»] chr6 (1 HSPs)
chr6 (17-267)||(5144250-5144500)
[»] chr5 (1 HSPs)
chr5 (20-60)||(14178714-14178754)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 267
Target Start/End: Complemental strand, 16866345 - 16866090
Alignment:
Q  12 atgaacatgaagctgctgcaacatattcaacttcagtagtagaaagagtaactataggctgctttttagatggacaggctattgcactatcaccaatcat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16866345 atgaacatgaagctgctgcaacatattcaacttcagtagtagaaagagtaactataggctgctttttagatggccaggctattgcactatcaccaatcat 16866246  T
Q  112 gaacacttagcgtgaagtgcttttcctgtcatcaacatcacctgcataatctgaatctgaccagccagtcaattttacctcttctcctttcttatacagg 211  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16866245 gaacacttagcgtaaagtgcttttcctgtcatcaacatcacctgcagaatctgaatttgaccagccagtcaattttacctcttctcctttcttatacagg 16866146  T
Q  212 attccatagttagcagttcctttcaagtaccttagaattatttcgatagctgatag 267  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  16866145 attccatagctagcagttcctttcaagtaccttagaattattttgatagctgatag 16866090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 1007271 - 1007170
Alignment:
Q  15 aacatgaagctgctgcaacatattcaacttcagtagtagaaagagtaactataggctgctttttagatggacaggctattgcactatcaccaatcatgaa 114  Q
    |||||||||||||||||||||||||  ||||||||||  | |||||||||||||| |||||||||||||  || ||||||||||||||||||||||||||    
T  1007271 aacatgaagctgctgcaacatattctgcttcagtagtgaagagagtaactataggttgctttttagatgaccaagctattgcactatcaccaatcatgaa 1007172  T
Q  115 ca 116  Q
    ||    
T  1007171 ca 1007170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 40610007 - 40610255
Alignment:
Q  12 atgaacatgaagctgctgcaacatattcaacttcagtagtagaaagagtaactataggctgctttttagatggacaggctattgcactatcaccaatcat 111  Q
    |||||||||||| ||||||||||||||   |||||||||| || |||||||||||||  || ||||||||||  || | |||||||||||||||||||||    
T  40610007 atgaacatgaagttgctgcaacatattatgcttcagtagtggagagagtaactatagattgttttttagatgaccaagttattgcactatcaccaatcat 40610106  T
Q  112 gaacacttagcgtgaagtgcttttcctgtcatcaacatcacctgcataatctgaatctgaccagccagtcaattttacctcttctcctttcttatacagg 211  Q
    | |||| |||| |||||| |||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||| | ||||||||     
T  40610107 gtacacatagcttgaagtacttttcttgtcatcaatatcacctgcataatctgaatctgaccaaccagtcaatttcacctcttctcctcttttatacagt 40610206  T
Q  212 attccatagttagcagttcctttcaagtaccttagaattatttcgatag 260  Q
    |||||||||||||||||||||||||| || ||||||||| ||| |||||    
T  40610207 attccatagttagcagttcctttcaaatatcttagaattcttttgatag 40610255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 27888009 - 27888258
Alignment:
Q  17 catgaagctgctgcaacatattcaacttcagtagtagaaagagtaactataggctgctttttagatggacaggctattgcactatcaccaatcatgaaca 116  Q
    ||||| |||||||||||||  ||| ||||| | || ||| |||||||||||||||||||||| ||||  || | |||||||| ||| |||||||| ||||    
T  27888009 catgacgctgctgcaacatcctcagcttcaatggtggaaggagtaactataggctgcttttttgatgaccaagatattgcaccatctccaatcataaaca 27888108  T
Q  117 cttagcgtgaagtgcttttcctgtcatcaacatcacctgcataatctgaatctgaccagccagtcaattttacctcttctcctttcttatacaggattcc 216  Q
    | ||||  |||||| ||||||||||||||| ||||| |||||| |||||||||||||||||| | ||| |||| | ||||||||||| ||||| || |||    
T  27888109 catagccagaagtg-ttttcctgtcatcaatatcacttgcatagtctgaatctgaccagccatttaatcttactttttctcctttctaatacatgactcc 27888207  T
Q  217 atagttagcagttcctttcaagtaccttagaattatttcgatagctgatag 267  Q
    ||||||| || ||||||| ||||||||||||||||||| || |||||||||    
T  27888208 atagttaacaattccttttaagtaccttagaattattttgaaagctgatag 27888258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 27946667 - 27946916
Alignment:
Q  17 catgaagctgctgcaacatattcaacttcagtagtagaaagagtaactataggctgctttttagatggacaggctattgcactatcaccaatcatgaaca 116  Q
    ||||| |||||||||||||  ||| ||||| | || ||| |||||||||||||||||||||| ||||  || | |||||||| ||| |||||||| ||||    
T  27946667 catgacgctgctgcaacatcctcagcttcaatggtggaaggagtaactataggctgcttttttgatgaccaagatattgcaccatctccaatcataaaca 27946766  T
Q  117 cttagcgtgaagtgcttttcctgtcatcaacatcacctgcataatctgaatctgaccagccagtcaattttacctcttctcctttcttatacaggattcc 216  Q
    | ||||  |||||| ||||||||||||||| ||||| |||||| |||||||||||||||||| | ||| |||| | ||||||||||| ||||| || |||    
T  27946767 catagccagaagtg-ttttcctgtcatcaatatcacttgcatagtctgaatctgaccagccatttaatcttactttttctcctttctaatacatgactcc 27946865  T
Q  217 atagttagcagttcctttcaagtaccttagaattatttcgatagctgatag 267  Q
    ||||||| || ||||||| ||||||||||||||||||| || |||||||||    
T  27946866 atagttaacaattccttttaagtaccttagaattattttgaaagctgatag 27946916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 28026910 - 28027159
Alignment:
Q  17 catgaagctgctgcaacatattcaacttcagtagtagaaagagtaactataggctgctttttagatggacaggctattgcactatcaccaatcatgaaca 116  Q
    ||||| |||||||||||||  ||| ||||| | || ||| |||||||||||||||||||||| ||||  || | |||||||| ||| |||||||| ||||    
T  28026910 catgacgctgctgcaacatcctcagcttcaatggtggaaggagtaactataggctgcttttttgatgaccaagatattgcaccatctccaatcataaaca 28027009  T
Q  117 cttagcgtgaagtgcttttcctgtcatcaacatcacctgcataatctgaatctgaccagccagtcaattttacctcttctcctttcttatacaggattcc 216  Q
    | ||||  |||||| ||||||||||||||| ||||| |||||| |||||||||||||||||| | ||| |||| | ||||||||||| ||||| || |||    
T  28027010 catagccagaagtg-ttttcctgtcatcaatatcacttgcatagtctgaatctgaccagccatttaatcttactttttctcctttctaatacatgactcc 28027108  T
Q  217 atagttagcagttcctttcaagtaccttagaattatttcgatagctgatag 267  Q
    ||||||| || ||||||| ||||||||||||||||||| || |||||||||    
T  28027109 atagttaacaattccttttaagtaccttagaattattttgaaagctgatag 28027159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 2083786 - 2083626
Alignment:
Q  24 ctgctgcaacatattcaacttcagtagtagaaagagtaactataggctgctttttagatggacaggctattgcactatcaccaatcatgaacacttagcg 123  Q
    ||||| ||||||| ||||||||||||||||||| |||||| || || ||||| |||||||  || | |||||| | ||  || |||||| |||| || |     
T  2083786 ctgctacaacatactcaacttcagtagtagaaaaagtaacaattggttgcttcttagatgaccaagatattgctccatttcctatcatgtacacatacct 2083687  T
Q  124 tgaagtgcttttcctgtcatcaacatcacctgcataatctgaatctgaccagccagtcaat 184  Q
    ||| || |||||||||||||     ||||  |||||||||||||||||||||||| |||||    
T  2083686 tgaggtacttttcctgtcatttgtgtcacaagcataatctgaatctgaccagccaatcaat 2083626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 20545310 - 20545077
Alignment:
Q  12 atgaacatgaagctgctgcaacatattcaacttcagtagtagaaagagtaactataggctgctttttagatggacaggctattgcactatcaccaatcat 111  Q
    ||||||||||||||||||||||||||||  |||||||||| || |||||||||||||| |||||||||||||  || ||||||| |||||||| ||||||    
T  20545310 atgaacatgaagctgctgcaacatattctgcttcagtagtggagagagtaactataggttgctttttagatgaccaagctattgtactatcacaaatcat 20545211  T
Q  112 gaacacttagcgtgaagtgcttttcctgtcatcaacatcacctgcataatctgaatctgaccagccagtcaattttacctcttctcctttcttatacagg 211  Q
    | |||| |||| |||||| ||||||||||||||||  ||||||||||||||||||||| |||| ||||||||||| ||||||||     ||||||| ||     
T  20545210 gtacacatagcctgaagtacttttcctgtcatcaatgtcacctgcataatctgaatctaaccaaccagtcaatttcacctcttc-----tcttatagagt 20545116  T
Q  212 attccatagttagcagttcctttcaagtaccttagaatt 250  Q
    ||||||||| |||||||||||||||| || |||||||||    
T  20545115 attccatagctagcagttcctttcaaatatcttagaatt 20545077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 47144631 - 47144396
Alignment:
Q  12 atgaacatgaagctgctgcaacatattcaacttcagtagtagaaagagtaactataggctgctttttagatggacaggctattgcactatcaccaatcat 111  Q
    |||| |||||||||||||| | ||| ||  ||||||||||||||||||||||||||||||||||||||||||  ||||||||||| | |||||||| |||    
T  47144631 atgagcatgaagctgctgctaaatactctgcttcagtagtagaaagagtaactataggctgctttttagatgaccaggctattgctccatcaccaaccat 47144532  T
Q  112 gaacacttagcgtgaagtgcttttcctgtcatcaacatcacctgcataatctgaatctgaccagccagtcaattttacctcttctcctttcttatacagg 211  Q
     ||||| || | ||| ||| ||||||| ||||||||||| | ||||||||||||||||||||| ||||||||  |||| || |||| |||||||||||      
T  47144531 aaacacataacttgatgtgtttttcctatcatcaacatctcatgcataatctgaatctgaccatccagtcaacattacttcctctcatttcttatacaat 47144432  T
Q  212 attccatagttagcagttcctttcaa-gtaccttag 246  Q
    ||||||||| | |||||||||||||| |||||||||    
T  47144431 attccatagcttgcagttcctttcaaggtaccttag 47144396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 5144250 - 5144500
Alignment:
Q  17 catgaagctgctgcaacatattcaacttcagtagtagaaagagtaactataggctgctttttagatggacaggctattgcactatcaccaatcatgaaca 116  Q
    ||||||||| |||||||||| ||||| ||||| || ||||||||||||||||||||||| |||||||   | |||||||||| ||| || ||||| ||||    
T  5144250 catgaagctactgcaacatactcaacctcagtggtggaaagagtaactataggctgcttcttagatgacaaagctattgcaccatccccgatcataaaca 5144349  T
Q  117 cttagcgtgaagtgcttttcctgtcatcaacatcacctgcataatctgaatctgaccagccagtcaattttacctcttctcctttcttatacaggattcc 216  Q
    | || | |||||||||||  |||||||||  |||||||||||| |||||||||||| ||| ||| ||| | |||| |||| || |||||| ||  | |||    
T  5144350 cataacctgaagtgctttctctgtcatcagtatcacctgcatagtctgaatctgactagctagttaatctcaccttttcttctctcttatgcataactcc 5144449  T
Q  217 atagttagcagttcctttcaagtaccttagaattatttcgatagctgatag 267  Q
    ||||||| ||||||||||||||||||| |||||| ||| ||||||||||||    
T  5144450 atagttaacagttcctttcaagtacctcagaattcttttgatagctgatag 5144500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 14178754 - 14178714
Alignment:
Q  20 gaagctgctgcaacatattcaacttcagtagtagaaagagt 60  Q
    ||||||||||||||| ||||| |||||||||||||||||||    
T  14178754 gaagctgctgcaacaaattcagcttcagtagtagaaagagt 14178714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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