View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19856_low_32 (Length: 272)
Name: NF19856_low_32
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 13409658 - 13409414
Alignment:
| Q |
1 |
acaagagataataatgtatacgaacacgtcaatttcgataataatttgaaaaaatgaattaatagaacttagttacacgtgttggtgttgtgactcagag |
100 |
Q |
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| T |
13409658 |
acaagagataataata-atagtaacacatcaatatcgataataatttgaaaaaataaattaatagaacttagttacacgtgttggtgttg--actcagag |
13409562 |
T |
|
| Q |
101 |
gcaaacacgagacatacttttgattagaagtgtcggtgctaacgacggtctaatggttatgcatggaggactatgatcttgcaacattat---tgtatta |
197 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13409561 |
gcaaacacaagacatacttttgattagaagtgtcggtgcttacgacggtctaatggttatgcatggaggactatgatcttgcaacattattcatgtatta |
13409462 |
T |
|
| Q |
198 |
tgagtagcttaataaaaaagac--aagtaaaattcaaaatgattatta |
243 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
13409461 |
tgagtagcttaataaaaaagacaaaagtaaaattcaaaataattatta |
13409414 |
T |
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