View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19856_low_36 (Length: 254)
Name: NF19856_low_36
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_low_36 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 418011 - 418240
Alignment:
| Q |
13 |
aaaatcaactcacaatgataaaagtgttataaaagaaacacttaaaaaggcaattggtgttgtgtgtgtaaacgcgttacatcaacannnnnnnnnnnnn |
112 |
Q |
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| T |
418011 |
aaaatcaactcacaatgataaaagtgttataaa-gaaacacttaaaaaggcaattggtgttgtgtgtgtaaacgcgttacatcaacatctctctct---- |
418105 |
T |
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| Q |
113 |
nccactcccactcaaggtcatgactcgatgaccatccaggttcccaccaaacactcttgttgagtatgagaaattagagaaagagaccccatgcaatcaa |
212 |
Q |
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| T |
418106 |
--ctctcccactcaaggtcatgactcgatgaccatccaggttcccaccaaacactcttgttgagtatgagaaattagagaaagagaccccatgcaatcaa |
418203 |
T |
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| Q |
213 |
atgccataaaacaaaacacaataaaaacatgatgctcccact |
254 |
Q |
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||||||| |||||||||||||||||||||||||||||| |
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| T |
418204 |
atgccat-----aaaacacaataaaaacatgatgctcccact |
418240 |
T |
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