View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19856_low_37 (Length: 253)
Name: NF19856_low_37
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_low_37 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 9462695 - 9462454
Alignment:
| Q |
1 |
ttgacaccgaagacatatctattgtctgacacaacactcacacgtgtaattacattcattaacttccatttttacaatggtgtcaatgtcgtgtctgtgt |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9462695 |
ttgacaccgaagacatgtctattgtctgacacgacactcacacgtgtaattacgttcattaacttccatttttacaatggtgtcaatgtcgtgtctgtgt |
9462596 |
T |
|
| Q |
101 |
cagtgtttcatagtttgatcagtgatgagacttttgtagatatgatagtgttgaatgttgaatttgaactatgccattaattaattatttgcttgaaatt |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9462595 |
cagtgtttcatagtttgattagtgatgagacttttgtagatatgatagtgttgaatgttgaatttgaactatgccattaattaattatttgcttgaaatt |
9462496 |
T |
|
| Q |
201 |
aattggttaggtttaactgatttgtaatgttgtagctgatga |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9462495 |
aattggttaggtttaactgatttgtaatgttgtagctgatga |
9462454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 10335771 - 10335804
Alignment:
| Q |
80 |
gtgtcaatgtcgtgtctgtgtcagtgtttcatag |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
10335771 |
gtgtcactgtcgtgtctgtgtcagtgtttcatag |
10335804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 33523453 - 33523486
Alignment:
| Q |
80 |
gtgtcaatgtcgtgtctgtgtcagtgtttcatag |
113 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
33523453 |
gtgtcaatgtcgtgtctgtgtcagtgttttatag |
33523486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University