View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19856_low_38 (Length: 249)

Name: NF19856_low_38

Description: NF19856

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19856_low_38

[»] chr8 (1 HSPs)

[»] chr2 (1 HSPs)

Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 181; E-Value: 7e-98

Query Start/End: Original strand, 1 - 244

Target Start/End: Complemental strand, 5492575 - 5492327

Alignment:

Q	1	aatgccttataaatttatacatcataattaatgaaacagattgtgttgaaattaaggctcaataatacaaacacgaataatagaccttcaataatac--a	98	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|
T	5492575	aatgccttataaatttatagatcataattaatgaaacagattgtgttgaaattaaggctcaataatacaaacacgaataatagaccttcaataatacata	5492476	T

Q	99	taggataagataggagtcgctttgtgataatagtatagtgtgggttaacttaaccattacattaaaatgtccacaaagtcaatatat---tcnnnnnnnn	195	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|
T	5492475	taggataagataggaatcgctttgtgataatagtatagtgtgggttaacttaaccattacattaaaatgtccacaaagtcaatatatatatatttttttt	5492376	T

Q	196	nacaaaccaaaatgaaatatattagattaaaatgagtggttcatctcac	244	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5492375	tacaagccaaaatgaaatatattagattaaaatgagtggttcatctcac	5492327	T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 37; E-Value: 0.000000000006

Query Start/End: Original strand, 197 - 241

Target Start/End: Original strand, 35499534 - 35499578

Alignment:

Q	197	acaaaccaaaatgaaatatattagattaaaatgagtggttcatct	241	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|
T	35499534	acaaaccaaaatgaaatatattagattaaaaagagtgattcatct	35499578	T

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