View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19856_low_40 (Length: 241)
Name: NF19856_low_40
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 6969564 - 6969350
Alignment:
| Q |
7 |
gtagcttaaacttttgcatcaggatatgtgatgtattcctaatttattataccttttggtatggtttgcatattttcctaatttaagttatgaaatgaac |
106 |
Q |
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| T |
6969564 |
gtagcttaaacttttgcatcaggatatgtgatatattcctaatttattataccttttggtttagtttgcatattttcctaatttaagttatgaaatgaac |
6969465 |
T |
|
| Q |
107 |
aacttgatgacatatataaaatgacaatgtgtgatgacttcaacttttggttttctttctaagattggggagcttaagaaactcgttgaagagggaaaaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6969464 |
aacttgatgacatatataaaatgacaatgtgtgatgacttcaacttttggtttt-tttctaagattggggagcttaagaaactcgttgaagagggaaaaa |
6969366 |
T |
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| Q |
207 |
taaaatacattggttt |
222 |
Q |
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|||||||||||||||| |
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| T |
6969365 |
taaaatacattggttt |
6969350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 6922318 - 6922107
Alignment:
| Q |
7 |
gtagcttaaacttttgcatcaggatatgtgatgtattcctaatttattataccttttggtatggtttgcatattttcctaatttaagttatgaaatgaac |
106 |
Q |
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|||||||||||||||||||||| ||||||||| | |||||||||||||||||||| |||| | || |||||||||||||||||||| || ||||| ||| |
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| T |
6922318 |
gtagcttaaacttttgcatcagcatatgtgatattttcctaatttattataccttatggtttagta-gcatattttcctaatttaagatacgaaataaac |
6922220 |
T |
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| Q |
107 |
aacttgatgacatatataaaatgacaatgtgtgatgacttcaacttttggttttctttctaagattggggagcttaagaaactcgttgaagagggaaaaa |
206 |
Q |
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|||||||||| |||||||||||||||||||| |||||||||||| |||||||||| |||||| || |||||||| ||||| |||||||||||||||| |
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| T |
6922219 |
tgcttgatgaca-atataaaatgacaatgtgtggtgacttcaactt--ggttttctttgtaagatcggagagcttaaaaaacttgttgaagagggaaaaa |
6922123 |
T |
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| Q |
207 |
taaaatacattggttt |
222 |
Q |
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|||||||||||||||| |
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| T |
6922122 |
taaaatacattggttt |
6922107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 6955894 - 6956105
Alignment:
| Q |
7 |
gtagcttaaacttttgcatcaggatatgtgatgtattcctaatttattataccttttggtatggtttgcatattttcctaatttaagttatgaaatgaac |
106 |
Q |
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|
|||||||||||||||||||||| ||||||||| | |||||||||||||||||||| |||| | || |||||||||||||||||||| || ||||| ||| |
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| T |
6955894 |
gtagcttaaacttttgcatcagcatatgtgatattttcctaatttattataccttatggtttagta-gcatattttcctaatttaagatacgaaataaac |
6955992 |
T |
|
| Q |
107 |
aacttgatgacatatataaaatgacaatgtgtgatgacttcaacttttggttttctttctaagattggggagcttaagaaactcgttgaagagggaaaaa |
206 |
Q |
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|||||||||| |||||||||||||||||||| |||||||||||| |||||||||| |||||| || |||||||| ||||| |||||||||||||||| |
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| T |
6955993 |
tgcttgatgaca-atataaaatgacaatgtgtggtgacttcaactt--ggttttctttgtaagatcggagagcttaaaaaacttgttgaagagggaaaaa |
6956089 |
T |
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| Q |
207 |
taaaatacattggttt |
222 |
Q |
| |
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|||||||||||||||| |
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| T |
6956090 |
taaaatacattggttt |
6956105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 6958885 - 6958922
Alignment:
| Q |
185 |
aaactcgttgaagagggaaaaataaaatacattggttt |
222 |
Q |
| |
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||||| ||||||||||| |||||||||||||||||||| |
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| T |
6958885 |
aaacttgttgaagagggcaaaataaaatacattggttt |
6958922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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