View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19856_low_41 (Length: 241)
Name: NF19856_low_41
Description: NF19856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19856_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 5492698 - 5492847
Alignment:
| Q |
1 |
tttccttcctttacaatgtgacaaagaatctggttgctgtattgctctaaatcaagnnnnnnncgacagctgcatatatgtgttacatggtttgagcggt |
100 |
Q |
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| T |
5492698 |
tttccttcctttacaatgtgacaaagaatgtggttgctgtattgctctaaatcaagaaaaaaacgacagctgcatatatgtgttacatggtttgagcggt |
5492797 |
T |
|
| Q |
101 |
tcataataggtttaagtgtgtggttcggttgtccttcaataactcatgat |
150 |
Q |
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| T |
5492798 |
tcataataggtttaagtgtgtggttcggttgtccttcaataactcatgat |
5492847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 5492878 - 5492923
Alignment:
| Q |
182 |
tatatttgtgatgattgtgaaagttgaaccgaattcatgaatattt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5492878 |
tatatttgtgatgattgtgaaagttgaaccgaattcatgaatattt |
5492923 |
T |
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